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We exploit flow propagation on the directed neuronal network of the nematode Caenorhabditis elegans to reveal dynamically relevant features of its connectome. We find flow-based groupings of neurons at different levels of granularity, which…

神经元与认知 · 定量生物学 2016-08-09 Karol A. Bacik , Michael T. Schaub , Mariano Beguerisse-Díaz , Yazan N. Billeh , Mauricio Barahona

We develop a biophysical model of neuro-sensory integration in the model organism Caenorhabditis elegans. Building on recent experimental findings of the neuron conductances and their resolved connectome, we posit the first full dynamic…

神经元与认知 · 定量生物学 2015-06-17 James Kunert , Eli Shlizerman , J. Nathan Kutz

Quantitative descriptions of network structure in big data can provide fundamental insights into the function of interconnected complex systems. Small-world structure, commonly diagnosed by high local clustering yet short average path…

神经元与认知 · 定量生物学 2015-05-12 Sarah Feldt Muldoon , Eric W. Bridgeford , Danielle S. Bassett

Recordings of whole brain activity with single neuron resolution are now feasible in simple organisms. Yet, it is still challenging to appropriately simplify such complex, noisy, and multivariate data in order to reveal general principles…

神经元与认知 · 定量生物学 2017-11-27 Connor Brennan , Alex Proekt

The large-scale structural ingredients of the brain and neural connectomes have been identified in recent years. These are, similar to the features found in many other real networks: the arrangement of brain regions into modules and the…

神经元与认知 · 定量生物学 2018-11-01 Gorka Zamora-López , Yuhan Chen , Gustavo Deco , Morten L. Kringelbach , Changsong Zhou

The question of controllability of natural and man-made network systems has recently received considerable attention. In the context of the human brain, the study of controllability may not only shed light into the organization and function…

最优化与控制 · 数学 2021-02-10 Tommaso Menara , Shi Gu , Danielle S. Bassett , Fabio Pasqualetti

The synaptic connectivity of cortical networks features an overrepresentation of certain wiring motifs compared to simple random-network models. This structure is shaped, in part, by synaptic plasticity that promotes or suppresses…

神经元与认知 · 定量生物学 2014-12-23 Gabriel Koch Ocker , Ashok Litwin-Kumar , Brent Doiron

We present an account of neuroplasticity with respect to cell-internal processing pathways in relation to membrane and synaptic plasticity. We think traditional synapse-centric, weight-based models of memorization are not sufficient or…

神经元与认知 · 定量生物学 2026-04-27 Gabriele Scheler

A major challenge in analyzing animal behavior is to discover some underlying simplicity in complex motor actions. Here we show that the space of shapes adopted by the nematode C. elegans is surprisingly low dimensional, with just four…

其他定量生物学 · 定量生物学 2016-01-05 Greg J Stephens , Bethany Johnson-Kerner , William Bialek , William S Ryu

A central idea in understanding brains and building artificial intelligence is that structure determines function. Yet, how the brain's complex structure arises from a limited set of genetic instructions remains a key question. The ultra…

神经元与认知 · 定量生物学 2026-01-28 Xingyu Liu , Yubin Li , Guozhang Chen

Synchronization plays a key role in information processing in neuronal networks. Response of specific groups of neurons are triggered by external stimuli, such as visual, tactile or olfactory inputs. Neurons, however, can be divided into…

适应与自组织系统 · 物理学 2020-03-02 Carolina A. Moreira , Marcus A. M. de Aguiar

The nematode Caenorhabditis elegans (C. elegans) is used as a model organism to better understand developmental biology and neurobiology. C. elegans features an invariant cell lineage, which has been catalogued and observed using…

计算机视觉与模式识别 · 计算机科学 2022-08-03 Andrew Lauziere , Ryan Christensen , Hari Shroff

Neural circuits must balance local connectivity constraints against the need for global integration. Here we introduce a minimal wiring rule motivated by synaptic crowding: as a neuron accumulates incoming connections, each additional…

神经元与认知 · 定量生物学 2026-03-23 Makoto Fukushima

Modeling the behavior of coupled networks is challenging due to their intricate dynamics. For example in neuroscience, it is of critical importance to understand the relationship between the functional neural processes and anatomical…

机器学习 · 计算机科学 2021-04-20 Hongyuan You , Sikun Lin , Ambuj K. Singh

A mechanism for self-organization of the degree of connectivity in model neural networks is studied. Network connectivity is regulated locally on the basis of an order parameter of the global dynamics which is estimated from an observable…

统计力学 · 物理学 2009-11-07 Stefan Bornholdt , Torsten Roehl

The brain can be considered as a system that dynamically optimizes the structure of anatomical connections based on the efficiency requirements of functional connectivity. To illustrate the power of this principle in organizing the…

神经元与认知 · 定量生物学 2024-02-07 Carlos Calvo Tapia , Valeriy A. Makarov Slizneva , Cees van Leeuwen

Neural connectomics has begun producing massive amounts of data, necessitating new analysis methods to discover the biological and computational structure. It has long been assumed that discovering neuron types and their relation to…

神经元与认知 · 定量生物学 2014-07-17 Eric Jonas , Konrad Kording

Networks of superconducting optoelectronic neurons are investigated for their near-term technological potential and long-term physical limitations. Networks with short average path length, high clustering coefficient, and power-law degree…

神经与进化计算 · 计算机科学 2018-05-17 Jeffrey M. Shainline , Jeff Chiles , Sonia M. Buckley , Adam N. McCaughan , Richard P. Mirin , Sae Woo Nam

The brain is a complex organ characterized by heterogeneous patterns of structural connections supporting unparalleled feats of cognition and a wide range of behaviors. New noninvasive imaging techniques now allow these patterns to be…

神经元与认知 · 定量生物学 2020-04-03 Christopher W. Lynn , Danielle S. Bassett

Biological neurons and their in-silico emulations for neuromorphic artificial intelligence (AI) use extraordinarily energy-efficient mechanisms, such as spike-based communication and local synaptic plasticity. It remains unclear whether…

神经与进化计算 · 计算机科学 2021-06-17 Timoleon Moraitis , Abu Sebastian , Evangelos Eleftheriou