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The population is composed of individuals characterised by their genetic strings, phenotypes and ages. We discuss the influence of probabilities of survival of the individuals on the dynamics and phenotypic variability of the population. We…

生物物理 · 物理学 2009-11-10 Iwona Mroz

Which factors govern the evolution of mutation rates and emergence of species? Here, we address this question using a first principles model of life where population dynamics of asexual organisms is coupled to molecular properties and…

种群与进化 · 定量生物学 2009-11-13 Muyoung Heo , Louis Kang , Eugene I. Shakhnovich

We are interested in modelling Darwinian evolution, resulting from the interplay of phenotypic variation and natural selection through ecological interactions. Our models are rooted in the microscopic, stochastic description of a population…

概率论 · 数学 2016-08-16 Nicolas Champagnat , Régis Ferrière , Sylvie Méléard

We study the dynamics of a population subject to selective pressures, evolving either on RNA neutral networks or in toy fitness landscapes. We discuss the spread and the neutrality of the population in the steady state. Different limits…

种群与进化 · 定量生物学 2009-11-13 Sumedha , Olivier C Martin , Luca Peliti

The spread of an advantageous mutation through a population is of fundamental interest in population genetics. While the classical Moran model is formulated for a well-mixed population, it has long been recognized that in real-world…

种群与进化 · 定量生物学 2022-09-27 Jasmine Foo , Einar Bjarki Gunnarsson , Kevin Leder , David Sivakoff

We introduce the following model for the evolution of a population. At every discrete time $j\geq 0$ exactly one individual is introduced in the population and is assigned a death probability $c_j$ sampled from $C$, a fixed probability…

概率论 · 数学 2023-07-20 Luiz Renato Fontes , Fabio P. Machado , Rinaldo B. Schinazi

We consider a stochastic model for species evolution. A new species is born at rate lambda and a species dies at rate mu. A random number, sampled from a given distribution F, is associated with each new species at the time of birth. Every…

概率论 · 数学 2011-02-15 Herve Guiol , Fabio P. Machado , Rinaldo B. Schinazi

In large populations, multiple beneficial mutations may be simultaneously spreading. In asexual populations, these mutations must either arise on the same background or compete against each other. In sexual populations, recombination can…

种群与进化 · 定量生物学 2013-12-19 D. B. Weissman , O. Hallatschek

Many studies have analyzed how variability in reproductive success affects fitness. However, each study tends to focus on a particular problem, leaving unclear the overall structure of variability in populations. This fractured conceptual…

种群与进化 · 定量生物学 2011-11-08 Steven A. Frank

We consider the evolution of populations under the joint action of mutation and differential reproduction, or selection. The population is modelled as a finite-type Markov branching process in continuous time, and the associated…

种群与进化 · 定量生物学 2009-02-23 Ellen Baake , Hans-Otto Georgii

We propose a mathematical framework for natural selection in finite populations. Traditionally, many of the selection-based processes used to describe cultural and genetic evolution (such as imitation and birth-death models) have been…

种群与进化 · 定量生物学 2015-11-18 Alex McAvoy

In this paper, we consider a fitness-level model of a non-elitist mutation-only evolutionary algorithm (EA) with tournament selection. The model provides upper and lower bounds for the expected proportion of the individuals with fitness…

神经与进化计算 · 计算机科学 2016-08-29 Anton Eremeev

In large asexual populations, multiple beneficial mutations arise in the population, compete, interfere with each other, and accumulate on the same genome, before any of them fix. The resulting dynamics, although studied by many authors, is…

种群与进化 · 定量生物学 2015-06-11 Daniel S. Fisher

A simulation model of a population having internal (genetic) structure is presented. The population is subject to selection pressure coming from the environment which is the same in the whole system but changes in time. Reproduction has a…

适应与自组织系统 · 物理学 2012-08-31 Andrzej Pekalski , Marcel Ausloos

In unicellular organisms such as bacteria and in most viruses, mutations mainly occur during reproduction. Thus, genotypes with a high birth rate should have a higher mutation rate. However, standard models of asexual adaptation such as the…

偏微分方程分析 · 数学 2021-11-10 Florian Patout , R Forien , M Alfaro , J Papaïx , L Roques

When an advantageous mutation occurs in a population, the favorable allele may spread to the entire population in a short time, an event known as a selective sweep. As a result, when we sample $n$ individuals from a population and trace…

概率论 · 数学 2007-05-23 Rick Durrett , Jason Schweinsberg

Evolutionary dynamics and patterns of molecular evolution are strongly influenced by selection on linked regions of the genome, but our quantitative understanding of these effects remains incomplete. Recent work has focused on predicting…

种群与进化 · 定量生物学 2013-05-29 Benjamin H. Good , Michael M. Desai

Cumulants and moments are closely related to the basic mathematics of continuous and discrete selection (respectively). These relationships generalize Fisher's fundamental theorem of natural selection and also make clear some of its…

种群与进化 · 定量生物学 2025-10-17 Hasan Ahmed , Deena Goodgold , Khushali Kothari , Rustom Antia

For two genotypes that have the same mean number of offspring but differ in the variance in offspring number, natural selection will favor the genotype with lower variance. The concept of fitness becomes cloudy under these conditions…

种群与进化 · 定量生物学 2007-05-23 Max Shpak , Stephen Proulx

Many mathematical models of evolution assume that all individuals experience the same environment. Here, we study the Moran process in heterogeneous environments. The population is of finite size with two competing types, which are exposed…

种群与进化 · 定量生物学 2018-12-19 Kamran Kaveh , Alex McAvoy , Martin A. Nowak