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This study investigates the correlation between dairy farm characteristics and methane concentrations as derived from satellite observations in Eastern Canada. Utilizing data from 11 dairy farms collected between January 2020 and December…

机器学习 · 计算机科学 2024-11-14 Hanqing Bi , Suresh Neethirajan

Metastasis is the leading cause of cancer-related mortality, yet most predictive models rely on shallow architectures and neglect patient-specific regulatory mechanisms. Here, we integrate classical machine learning and deep learning to…

其他定量生物学 · 定量生物学 2025-12-29 Jiwei Fu , Chunyu Yang

Objective: Ghrelin is an orexigenic peptide hormone involved in the regulation of energy homeostasis, food intake and glucose metabolism. Serum levels increase anticipating a meal and fall afterwards. Underlying genetic mechanisms of the…

Background: Synthetic lethality (SL) refers to the genetic interaction between two or more genes where only their co-alteration (e.g. by mutations, amplifications or deletions) results in cell death. In recent years, SL has emerged as an…

分子网络 · 定量生物学 2015-10-06 Sriganesh Srihari , Jitin Singla , Limsoon Wong , Mark A. Ragan

Background: Often when undertaking meta-analyses of time-to-event (TTE) outcomes, especially in a Health Technology Assessment context, a hazard ratio (HR) scale is used. However, issues arise when there is evidence of non-proportional…

统计方法学 · 统计学 2026-05-21 Rhiannon K Owen , Keith R Abrams

Multiple indications of disease progression found in a cancer patient by loco-regional relapse, distant metastasis and death. Early identification of these indications is necessary to change the treatment strategy. Biomarkers play an…

应用统计 · 统计学 2021-07-23 Atanu Bhattacharjee , Gajendra K. Vishwakarma , Souvik Banerjee

Breast cancer is a significant public health concern and early detection is critical for triaging high risk patients. Sequential screening mammograms can provide important spatiotemporal information about changes in breast tissue over time.…

图像与视频处理 · 电气工程与系统科学 2023-06-05 Hong Hui Yeoh , Andrea Liew , Raphaël Phan , Fredrik Strand , Kartini Rahmat , Tuong Linh Nguyen , John L. Hopper , Maxine Tan

Type 2 diabetes mellitus represents a prevalent and widespread global health concern, necessitating a comprehensive assessment of its risk factors. This study aimed towards learning whether there is any differential impact of age,…

Heritable differences in gene expression between individuals are an important source of phenotypic variation. The question of how closely the effects of genetic variation on protein levels mirror those on mRNA levels remains open. Here, we…

基因组学 · 定量生物学 2014-09-04 Frank W. Albert , Dale Muzzey , Jonathan Weissman , Leonid Kruglyak

A central problem when studying adaptation to a new environment is the interplay between genetic variation and phenotypic plasticity. Arabidopsis thaliana has colonized a wide range of habitats across the world and it is therefore an…

种群与进化 · 定量生物学 2014-12-22 Xia Shen , Simon Forsberg , Mats Pettersson , Zheya Sheng , Orjan Carlborg

In epidemiology, identifying subpopulations that are particularly vulnerable to exposures and those who may benefit differently from exposure-reducing interventions is essential. Factors such as age, gender-specific vulnerabilities, and…

统计方法学 · 统计学 2024-12-11 David McCoy , Wenxin Zhang , Alan Hubbard , Mark van der Laan , Alejandro Schuler

CpG islands (CGI) marked by bivalent chromatin in stem cells are believed to be more prone to aberrant DNA methylation in tumor cells. The robustness and genome-wide extent of this instructive program in different cancer types remain to be…

基因组学 · 定量生物学 2018-11-12 Franck Court , Philippe Arnaud

Genetic variants identified to date by genome-wide association studies only explain a small fraction of total heritability. Gene-by-gene interaction is one important potential source of unexplained heritability. In the first part of this…

统计方法学 · 统计学 2016-05-10 Chen Lu

We updated the agent based Monte Carlo code HERITAGE that simulates human evolution within restrictive environments such as interstellar, sub-light speed spacecraft in order to include the effects of population genetics. We incorporated a…

科普物理 · 物理学 2021-02-03 F. Marin , C. Beluffi , F. Fischer

This study introduces a novel approach for early Type 2 Diabetes Mellitus (T2DM) risk prediction using a tabular transformer (TabTrans) architecture to analyze longitudinal patient data. By processing patients` longitudinal health records…

计算机视觉与模式识别 · 计算机科学 2026-01-21 Sulaiman Khan , Md. Rafiul Biswas , Zubair Shah

The effects of inbreeding on human health depend critically on the number and severity of recessive, deleterious mutations carried by individuals. In humans, existing estimates of these quantities are based on comparisons between…

种群与进化 · 定量生物学 2014-07-29 Ziyue Gao , Darrel Waggoner , Matthew Stephens , Carole Ober , Molly Przeworski

Non-invasive inference of molecular tumor characteristics from medical imaging is a central goal of radiogenomics, particularly in glioblastoma (GBM), where O6-methylguanine-DNA methyltransferase (MGMT) promoter methylation carries…

计算机视觉与模式识别 · 计算机科学 2026-05-15 Mariya Miteva , Maria Nisheva-Pavlova

Cancer is fundamentally a genetic disease characterized by genetic and epigenetic alterations that disrupt normal gene expression, leading to uncontrolled cell growth and metastasis. High-dimensional microarray datasets pose challenges for…

Serum prostate-specific antigen (PSA) is widely used for prostate cancer screening. While the genetics of PSA levels has been studied to enhance screening accuracy, the genetic basis of PSA velocity, the rate of PSA change over time,…

应用统计 · 统计学 2025-09-25 Pei Zhang , Xiaoyu Wang , Jianxin Shi , Paul S. Albert

Motivation: Predicting the metastatic potential of primary malignant tissues has direct bearing on choice of therapy. Several microarray studies yielded gene sets whose expression profiles successfully predicted survival (Ramaswamy et al…

定量方法 · 定量生物学 2007-05-23 Liat Ein-Dor , Itai Kela , Gad Getz , David Givol , Eytan Domany