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相关论文: Dynamics of stress p53: Nitric oxide induced trans…

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We study how the temporal behaviours of p53 and MDM2 are affected by stress inducing bioactive molecules NO (Nitric Oxide) in the p53-MDM2-NO regulatory network. We also study synchronization among a group of identical stress systems…

分子网络 · 定量生物学 2014-09-03 Gurumayum Reenaroy Devi , Md. Jahoor Alam , R. K. Brojen Singh

We present p53-MDM2-Glucose model to study spatio-temporal properties of the system induced by glucose. The variation in glucose concentration level triggers the system at different states, namely, oscillation death (stabilized), sustain…

亚细胞过程 · 定量生物学 2015-04-03 Md. Jahoor Alam , R. K. Brojen Singh

SMAR1 is a sensitive signaling molecule in p53 regulatory network which can drive p53 network dynamics to three distinct states, namely, stabilized (two), damped and sustain oscillation states. In the interaction of p53 network with SMAR1,…

分子网络 · 定量生物学 2015-10-12 Md. Zubbair Malik , Md. Jahoor Alam , Romana Ishrat , Subhash M. Agarwal , R. K. Brojen Singh

We consider the dynamics of a periodic chain of N coupled overdamped particles under the influence of noise, in the limit of large N. Each particle is subjected to a bistable local potential, to a linear coupling with its nearest…

概率论 · 数学 2007-10-16 Nils Berglund , Bastien Fernandez , Barbara Gentz

We present the mechanism of interaction of Wnt network module, which is responsible for periodic sometogenesis, with p53 regulatory network, which is one of the main regulators of various cellular functions, and switching of various…

亚细胞过程 · 定量生物学 2015-03-17 Md. Zubbair Malik , Shahnawaz Ali , Md. Jahoor Alam , Romana Ishrat , R. K. Brojen Singh

The regulating mechanism of miRNA on p53 dynamics in p53-MDM2-miRNA model network incorporating reactive oxygen species (ROS) is studied. The study shows that miRNA drives p53 dynamics at various states, namely, stabilized states and…

分子网络 · 定量生物学 2014-09-09 Md. Jahoor Alam , Shazia Kunvar , R. K. Brojen Singh

Recent studies suggest that PML (Promyelocytic Leukemia) suppresses p53 protein degradation by inhibiting MDM2 protein in the nucleus [1], and regulates a number of biological functions [2]. We modeled a PML-MDM2-p53 regulatory network by…

分子网络 · 定量生物学 2015-04-21 Md. Jahoor Alam , Eyad M. AlShammari , R. K. Brojen Singh

We study the regulating mechanism of p53 on the properties of cell cycle dynamics in the light of the proposed model of interacting p53 and cell cycle networks via p53. Irradiation (IR) introduce to p53 compel p53 dynamics to suffer…

分子网络 · 定量生物学 2014-10-14 Md. Jahoor Alam , Sanjay Kumar , Vikram Singh , R. K. Brojen Singh

Deterministic and stochastic Boolean network models are build for the dynamics of negative feedback loops of the p53 pathways. It is shown that the main function of the negative feedback in the p53 pathways is to keep p53 at a low steady…

分子网络 · 定量生物学 2009-04-16 Hao Ge , Min Qian

We consider the dynamics of a periodic chain of N coupled overdamped particles under the influence of noise. Each particle is subjected to a bistable local potential, to a linear coupling with its nearest neighbours, and to an independent…

概率论 · 数学 2007-10-16 Nils Berglund , Bastien Fernandez , Barbara Gentz

A feedback mechanism that involves the proteins p53 and mdm2, induces cell death as a controled response to severe DNA damage. A minimal model for this mechanism demonstrates that the respone may be dynamic and connected with the time…

无序系统与神经网络 · 物理学 2009-11-07 G. Tiana , M. H. Jensen , K. Sneppen

The cooperative behavior of neurons and neuronal areas associated with the synchronization behavior proves to be a fundamental neural mechanism. In addition, abnormal levels of synchronization have been related to unhealthy neural…

生物物理 · 物理学 2023-11-16 Bruno R. R. Boaretto

We propose a statistical model of a large random network with high connectivity in order to describe the behavior of {\it E.\,coli} cells after exposure to acute stress. The building blocks of this network are feedback cycles typical of the…

无序系统与神经网络 · 物理学 2022-02-22 S. Reich , S. Maoz , Y. Kaplan , H. Rappeport , N. Q. Balaban , O. Agam

We report a detailed study of neuromorphic switching behaviour in inherently complex percolating networks of self-assembled metal nanoparticles. We show that variation of the strength and duration of the electric field applied to this…

无序系统与神经网络 · 物理学 2019-03-06 S. K. Bose , S. Shirai , J. B. Mallinson , S. A. Brown

Coherent oscillatory activity can arise spontaneously as a result of increased coupling in a system of excitable and passive cells, each being quiescent in isolation. This can potentially explain the appearance of spontaneous rhythmic…

无序系统与神经网络 · 物理学 2012-12-17 Jinshan Xu , Rajeev Singh , Nicolas Garnier , Sitabhra Sinha , Alain Pumir

We study the occurrence of frequency synchronised states with tunable emergent frequencies in a network of connected systems. This is achieved by the interplay between time scales of nonlinear dynamical systems connected to form a network,…

混沌动力学 · 物理学 2018-09-05 Kajari Gupta , G. Ambika

In this paper, we investigate how the internal dynamics of the systems within a network influence the transition to synchronization in adaptive networks of coupled Rossler systems. The network structure is dynamically determined by local…

It is well known that the addition of noise to a multistable dynamical system can induce random transitions from one stable state to another. For low noise, the times between transitions have an exponential tail and Kramers' formula gives…

动力系统 · 数学 2017-11-15 Peter Ashwin , Jennifer Creaser , Krasimira Tsaneva-Atanasova

Dynamics of p53 is known to play important roles in the regulation of cell fate decisions in response to various stresses, and PDCD5 functions as a co-activator of p53 to modulate the p53 dynamics. In the present paper, we investigate how…

分子网络 · 定量生物学 2015-03-31 Yuanhong Bi , Zhuoqin Yang , Changjing Zhuge , Jinzhi Lei

We analyze the effects of noise on the permutation entropy of dynamical systems. We take as numerical examples the logistic map and the R\"ossler system. Upon varying the noise strengthfaster, we find a transition from an…

数据分析、统计与概率 · 物理学 2015-09-30 C. Quintero-Quiroz , Simone Pigolotti , M. C. Torrent , Cristina Masoller
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