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We propose a numerical method to learn Maximum Entropy (MaxEnt) distributions with spatio-temporal constraints from experimental spike trains. This is an extension of two papers [10] and [4] who proposed the estimation of parameters where…

神经元与认知 · 定量生物学 2015-06-19 Hassan Nasser , Bruno Cessac

Understanding how stimuli and synaptic connectivity in uence the statistics of spike patterns in neural networks is a central question in computational neuroscience. Maximum Entropy approach has been successfully used to characterize the…

生物物理 · 物理学 2016-11-26 Rodrigo Cofre , Bruno Cessac

Spiking activity from populations of neurons display causal interactions and memory effects. Therefore, they are expected to show some degree of irreversibility in time. Motivated by the spike train statistics, in this paper we build a…

生物物理 · 物理学 2015-12-07 Rodrigo Cofre , Cesar Maldonado

The characterization of network and biophysical properties from neural spiking activity is an important goal in neuroscience. A framework that provides unbiased inference on causal synaptic interaction and single neural properties has been…

神经元与认知 · 定量生物学 2024-05-27 Kevin S. Chen , Ying-Jen Yang

In this paper, we develop a general theory for the estimation of the transition probabilities of reversible Markov chains using the maximum entropy principle. A broad range of physical models can be studied within this approach. We use…

统计力学 · 物理学 2015-05-14 Erik Van der Straeten

We briefly review and highlight the consequences of rigorous and exact results obtained in \cite{cessac:10}, characterizing the statistics of spike trains in a network of leaky Integrate-and-Fire neurons, where time is discrete and where…

适应与自组织系统 · 物理学 2010-08-31 Bruno Cessac , Hassan Nasser , Juan-Carlos Vasquez

Understanding the dynamics of neural networks is a major challenge in experimental neuroscience. For that purpose, a modelling of the recorded activity that reproduces the main statistics of the data is required. In a first part, we present…

神经元与认知 · 定量生物学 2014-04-15 Hassan Nasser , Olivier Marre , Bruno Cessac

We propose a method to derive the stationary size distributions of a system, and the degree distributions of networks, using maximisation of the Gibbs-Shannon entropy. We apply this to a preferential attachment-type algorithm for systems of…

物理与社会 · 物理学 2020-03-17 Cornelia Metzig , Caroline Colijn

We consider the evolution of a network of neurons, focusing on the asymptotic behavior of spikes dynamics instead of membrane potential dynamics. The spike response is not sought as a deterministic response in this context, but as a…

数据分析、统计与概率 · 物理学 2010-08-27 J. C. Vasquez , B. Cessac , T. Viéville

This paper is based on a lecture given in the LACONEU summer school, Valparaiso, January 2012. We introduce Gibbs distribution in a general setting, including non stationary dynamics, and present then three examples of such Gibbs…

生物物理 · 物理学 2014-04-15 B. Cessac , R. Cofré

Across many fields, a problem of interest is to predict the transition rates between nodes of a network, given limited stationary state and dynamical information. We give a solution using the principle of Maximum Caliber. We find the…

分子网络 · 定量生物学 2015-04-07 Purushottam D. Dixit , Abhinav Jain , Gerhard Stock , Ken. A. Dill

This paper addresses two questions in the context of neuronal networks dynamics, using methods from dynamical systems theory and statistical physics: (i) How to characterize the statistical properties of sequences of action potentials…

适应与自组织系统 · 物理学 2015-05-13 B. Cessac , H. Rostro , J. C. Vasquez , T. Viéville

We consider the maximum entropy Markov chain inference approach to characterize the collective statistics of neuronal spike trains, focusing on the statistical properties of the inferred model. We review large deviations techniques useful…

神经元与认知 · 定量生物学 2018-08-15 Rodrigo Cofre , Cesar Maldonado , Fernando Rosas

Maximum entropy methods provide a principled path connecting measurements of neural activity directly to statistical physics models, and this approach has been successful for populations of $N\sim 100$ neurons. As $N$ increases in new…

生物物理 · 物理学 2023-10-18 Christopher W. Lynn , Qiwei Yu , Rich Pang , William Bialek , Stephanie E. Palmer

In many realistic systems, maximum entropy principle (MEP) analysis provides an effective characterization of the probability distribution of network states. However, to implement the MEP analysis, a sufficiently long-time data recording in…

生物物理 · 物理学 2019-02-27 Zhi-Qin John Xu , Jennifer Crodelle , Douglas Zhou , David Cai

We introduce a mathematical framework where the statistics of spikes trains, produced by neural networks evolving under synaptic plasticity, can be analysed.

适应与自组织系统 · 物理学 2008-10-23 B. Cessac , H. Rostro , J. C. Vasquez , T. Viéville

We consider a model of interacting neurons where the membrane potentials of the neurons are described by a multidimensional piecewise deterministic Markov process (PDMP) with values in ${\mathbb R}^N, $ where $ N$ is the number of neurons…

统计理论 · 数学 2016-10-04 Pierre Hodara , Nathalie Krell , Eva Löcherbach

In this paper an alternative approach to statistical mechanics based on the maximum information entropy principle (MaxEnt) is examined, specifically its close relation with the Gibbs method of ensembles. It is shown that the MaxEnt…

统计力学 · 物理学 2016-05-30 Domagoj Kuic

Maximum entropy (maxEnt) inference of state probabilities using state-dependent constraints is popular in the study of complex systems. In stochastic dynamical systems, the effect of state space topology and path-dependent constraints on…

统计力学 · 物理学 2015-10-28 Purushottam D. Dixit

Maximum entropy models are the least structured probability distributions that exactly reproduce a chosen set of statistics measured in an interacting network. Here we use this principle to construct probabilistic models which describe the…

神经元与认知 · 定量生物学 2014-01-28 Gašper Tkačik , Olivier Marre , Dario Amodei , Elad Schneidman , William Bialek , Michael J Berry
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