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Generalization of the Rouse model without any use of the postulates concerning the Gaussian distribution of the vector connecting the ends of segments is advanced. In the initial (in general, nonlinear) Langevin equations, self-averaging…

软凝聚态物质 · 物理学 2016-11-27 Nail Fatkullin

We studied the dynamics of isotropic-nematic transitions in liquid crystalline polymers by integrating time-dependent Ginzburg-Landau equations. In a concentrated solution of rodlike polymers, the rotational diffusion constant Dr of the…

软凝聚态物质 · 物理学 2015-05-28 Shunsuke Yabunaka , Takeaki Araki

The study of the noise induced effects on the dynamics of a chain molecule crossing a potential barrier, in the presence of a metastable state, is presented. A two-dimensional stochastic version of the Rouse model for a flexible polymer has…

统计力学 · 物理学 2015-05-13 N. Pizzolato , A. Fiasconaro , B. Spagnolo

In spatially distributed cellular systems, it is often convenient to represent complicated auxiliary pathways and spatial transport by time-delayed reaction rates. Furthermore, many of the reactants appear in low numbers necessitating a…

定量方法 · 定量生物学 2015-05-14 Matthew Scott

While Flory theories provide an extremely useful framework for understanding the behavior of interacting, randomly branching polymers, the approach is inherently limited. Here we use a combination of scaling arguments and computer…

统计力学 · 物理学 2017-01-18 Angelo Rosa , Ralf Everaers

The reaction-diffusion master equation is a stochastic model often utilized in the study of biochemical reaction networks in living cells. It is applied when the spatial distribution of molecules is important to the dynamics of the system.…

数值分析 · 数学 2017-03-08 Stefan Hellander , Linda Petzold

Intracellular transport of organelles is fundamental to cell function and health. The mounting evidence suggests that this transport is in fact anomalous. However, the reasons for the anomaly is still under debate. We examined experimental…

亚细胞过程 · 定量生物学 2018-12-10 Nickolay Korabel , Thomas A. Waigh , Sergei Fedotov , Viki J. Allan

We discuss the structure of the equation of motion that governs nucleation processes at first order phase transitions. From the underlying microscopic dynamics of a nucleating system, we derive by means of a non-equilibrium projection…

统计力学 · 物理学 2019-12-04 Anja Kuhnhold , Hugues Meyer , Graziano Amati , Philipp Pelagejcev , Tanja Schilling

Diffusion-limited association reactions are ubiquitous in nature. They are particularly important for biological reactions, where the reaction rates are often determined by the diffusive transport of the molecules on two-dimensional…

软凝聚态物质 · 物理学 2020-10-06 Sumantra Sarkar

We study irreversible A-B reaction kinetics at a fixed interface separating two immiscible bulk phases, A and B. We consider general dynamical exponent $z$, where $x_t\sim t^{1/z}$ is the rms diffusion distance after time $t$. At short…

软凝聚态物质 · 物理学 2007-05-23 Ben O'Shaughnessy , Dimitrios Vavylonis

In most natural sciences there is currently the insight that it is necessary to bridge gaps between different processes which can be observed on different scales. This is especially true in the field of chemical reactions where the…

分子网络 · 定量生物学 2008-03-03 L. Sbano , M. Kirkilionis

A new asymptotic method is presented for the analysis of the traveling waves in the one-dimensional reaction-diffusion system with the diffusion with a finite velocity and Kolmogorov-Petrovskii-Piskunov kinetics. The analysis makes use of…

统计力学 · 物理学 2007-05-23 Sergei Fedotov

Many mathematical models for biological phenomena, such as the spread of diseases, are based on reaction-diffusion equations for densities of interacting cell populations. We present a consistent derivation of reaction-diffusion equations…

偏微分方程分析 · 数学 2026-02-23 Marzia Bisi , Davide Cusseddu , Ana Jacinta Soares , Romina Travaglini

We study a reaction-diffusion process that involves two species of atoms, immobile and diffusing. We assume that initially only immobile atoms, uniformly distributed throughout the entire space, are present. Diffusing atoms are injected at…

统计力学 · 物理学 2014-07-18 P. L. Krapivsky

In this paper, we study a new micro-macro model for a reactive polymeric fluid, which is derived recently in [Y. Wang, T.-F. Zhang, and C. Liu, \emph{J. Non-Newton. Fluid Mech.} 293 (2021), 104559, 13 pp], by using the energetic variational…

偏微分方程分析 · 数学 2021-11-12 Chun Liu , Yiwei Wang , Teng-Fei Zhang

The aim of this paper is to compare results from lattice-Boltzmann and Brownian dynamics simulations of linear chain molecules. We have systematically varied the parameters that may affect the accuracy of the lattice-Boltzmann simulations,…

计算物理 · 物理学 2015-05-13 Anthony J. C. Ladd , Rahul Kekre , Jason E. Butler

We present a detailed study of the static and dynamic behavior of long semiflexible polymer chains in a melt. Starting from previously obtained fully equilibrated high molecular weight polymer melts [{\it Zhang et al.} ACS Macro Lett. 3,…

软凝聚态物质 · 物理学 2016-05-25 Hsiao-Ping Hsu , Kurt Kremer

The longitudinal response of single semiflexible polymers to sudden changes in externally applied forces is known to be controlled by the propagation and relaxation of backbone tension. Under many experimental circumstances, realized, e.g.,…

软凝聚态物质 · 物理学 2011-02-25 Florian Thüroff , Benedikt Obermayer , Erwin Frey

In this paper, the looping kinetics of a long polymer chain in solution has been investigated by using two state model, where one state represents open chain polymer molecule and the other represents closed chain polymer molecule. The…

软凝聚态物质 · 物理学 2017-05-24 Moumita Ganguly , Aniruddha Chakraborty

A novel probabilistic framework for modelling anomalous diffusion is presented. The resulting process is Markovian, non-homogeneous, non-stationary, non-ergodic, and state-dependent. The fundamental law governing this process is driven by…

数学物理 · 物理学 2025-03-07 Nestor Barraza , Gabriel Pena , Juliana Gambini , Florencia Carusela
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