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The growth-fragmentation equation models systems of particles that grow and split as time proceeds. An important question concerns the large time asymptotic of its solutions. Doumic and Escobedo ($2016$) observed that when growth is a…

概率论 · 数学 2019-04-30 Benedetta Cavalli

The variability in cell size of an isogenic population of Escherichia coli has been widely reported in experiment. The probability density function (PDF) of cell lengths has been variously described by exponential and lognormal functions.…

细胞行为 · 定量生物学 2019-05-21 Chaitanya A. Athale

We introduce a probabilistic framework for two-sample comparison based on a nonparametric process taking the form of a Markov model that transitions between a "divide" and a "merge" state on a multi-resolution partition tree of the sample…

统计方法学 · 统计学 2014-05-30 Jacopo Soriano , Li Ma

We study the long-time behaviour of the growth-fragmentation equation, a nonlocal linear evolution equation describing a wide range of phenomena in structured population dynamics. We show the existence of a spectral gap under conditions…

偏微分方程分析 · 数学 2023-09-25 José A. Cañizo , Pierre Gabriel , Havva Yoldaş

Cells actively regulate their size during the cell cycle to maintain volume homeostasis across generations. While various mathematical models of cell size regulation have been proposed to explain how this is achieved, relating these models…

定量方法 · 定量生物学 2025-04-11 Kaan Öcal , Michael P. H. Stumpf

We study the existence and uniqueness of the solution of a non-linear coupled system constituted of a degenerate diffusion-growth-fragmentation equation and a differential equation, resulting from the modeling of bacterial growth in a…

偏微分方程分析 · 数学 2023-03-22 Josué Tchouanti

Existing approaches to modeling the dynamics of brain tumor growth, specifically glioma, employ biologically inspired models of cell diffusion, using image data to estimate the associated parameters. In this work, we propose an alternative…

Protein distributions measured under a broad set of conditions in bacteria and yeast were shown to exhibit a common skewed shape, with variances depending quadratically on means. For bacteria these properties were reproduced by temporal…

生物物理 · 物理学 2015-10-28 Naama Brenner , C. M. Newman , Dino Osmanovic , Yitzhak Rabin , Hanna Salman , D. L. Stein

We studied how to obtain a distribution for the number of ancestors in species of sexual reproduction. Present models concentrate on the estimation of distributions repetitions of ancestors in genealogical trees. It has been shown that is…

生物物理 · 物理学 2019-09-12 M. Caruso , C. Jarne

We study a simple model of DNA evolution in a growing population of cells. Each cell contains a nucleotide sequence which randomly mutates at cell division. Cells divide according to a branching process. Following typical parameter values…

概率论 · 数学 2020-06-05 David Cheek , Tibor Antal

We present an asymptotic analysis of a stochastic two-compartmental cell division system with regulatory mechanisms inspired by Getto et al. (2013). The hematopoietic system is modeled as a two-compartment system, where the first…

种群与进化 · 定量生物学 2025-06-30 Ren-Yi Wang , Marek Kimmel , Guodong Pang

We investigate the statistics of trees grown from some initial tree by attaching links to preexisting vertices, with attachment probabilities depending only on the valence of these vertices. We consider the asymptotic mass distribution that…

统计力学 · 物理学 2007-05-23 François David , Philippe Di Francesco , Emmanuel Guitter , Thordur Jonsson

The space subdivision in cells resulting from a process of random nucleation and growth is a subject of interest in many scientific fields. In this paper, we deduce the expected value and variance of these distributions while assuming that…

材料科学 · 物理学 2008-10-16 Jordi Farjas , Pere Roura

Inspired by biological dynamics, we consider a growth Markov process taking values on the space of rooted binary trees, similar to the Aldous-Shields model. Fix $n\ge 1$ and $\beta>0$. We start at time 0 with the tree composed of a root…

细胞行为 · 定量生物学 2012-08-14 C. Landim , R. D. Portugal , B. F. Svaiter

We consider a branching particle system where each particle moves as an independent Brownian motion and breeds at a rate proportional to its distance from the origin raised to the power $p$, for $p\in[0,2)$. The asymptotic behaviour of the…

Development combines three basic processes asymmetric --- cell division, signaling and gene regulation --- in a multitude of ways to create an overwhelming diversity of multicellular life-forms. Here, we attempt to chart this diversity…

分子网络 · 定量生物学 2020-01-01 Somya Mani , Tsvi Tlusty

Stochastic models of sequential mutation acquisition are widely used to quantify cancer and bacterial evolution. Across manifold scenarios, recurrent research questions are: how many cells are there with $n$ alterations, and how long will…

种群与进化 · 定量生物学 2023-07-07 Michael D. Nicholson , David Cheek , Tibor Antal

We introduce and analyze several aspects of a new model for cell differentiation. It assumes that differentiation of progenitor cells is a continuous process. From the mathematical point of view, it is based on partial differential…

偏微分方程分析 · 数学 2013-01-21 Marie Doumic , Anna Marciniak-Czochra , Benoit Perthame , Jorge P. Zubelli

In this note, we consider general growth-fragmentation equations from a probabilistic point of view. Using Foster-Lyapunov techniques, we study the recurrence of the associated Markov process depending on the growth and fragmentation rates.…

概率论 · 数学 2016-11-03 Florian Bouguet

We study a two-type branching process which provides excellent description of experimental data on cell dynamics in skin tissue (Clayton et al., 2007). The model involves only a single type of progenitor cell, and does not require support…

种群与进化 · 定量生物学 2010-11-18 Tibor Antal , P. L. Krapivsky