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Pairwise models are used widely to model epidemic spread on networks. These include the modelling of susceptible-infected-removed (SIR) epidemics on regular networks and extensions to SIS dynamics and contact tracing on more exotic networks…

种群与进化 · 定量生物学 2018-09-24 István Z. Kiss , Joel C. Miller , Péter L. Simon

Networks are ubiquitous in economic research on organizations, trade, and many other areas. However, while economic theory extensively considers networks, no general framework for their empirical modeling has yet emerged. We thus introduce…

统计方法学 · 统计学 2023-07-10 Giacomo De Nicola , Cornelius Fritz , Marius Mehrl , Göran Kauermann

The models in statistical physics such as an Ising model offer a convenient way to characterize stationary activity of neural populations. Such stationary activity of neurons may be expected for recordings from in vitro slices or…

神经元与认知 · 定量生物学 2017-05-05 Christian Donner , Klaus Obermayer , Hideaki Shimazaki

This paper investigates absorbing-state phase transitions in opinion dynamics through a master-node network model analyzed using annealing approximation. We develop a theoretical framework examining three fundamental regimes: systems…

物理与社会 · 物理学 2025-12-29 M. O. Hase , Anderson A. Ferreira , André C. R. Martins , Fernando F. Ferreira

The probability distribution describing the state of a Stochastic Reaction Network evolves according to the Chemical Master Equation (CME). It is common to estimated its solution using Monte Carlo methods such as the Stochastic Simulation…

定量方法 · 定量生物学 2015-06-18 Benjamin Hepp , Ankit Gupta , Mustafa Khammash

In nonlinear voter models the transitions between two states depend in a nonlinear manner on the frequencies of these states in the neighborhood. We investigate the role of these nonlinearities on the global outcome of the dynamics for a…

统计力学 · 物理学 2009-04-05 Frank Schweitzer , Laxmidhar Behera

We introduce a simple model of static networks, where nodes are located on a ring structure, and two accompanying dynamic rules of repeated averaging on periodic node states. We assume nodes can interact with neighbors, and will add…

物理与社会 · 物理学 2012-03-16 Suhan Ree

We study binary state contagion dynamics on a social network where nodes act in response to the average state of their neighborhood. We model the competing tendencies of imitation and non-conformity by incorporating an off-threshold into…

物理与社会 · 物理学 2015-03-13 Kameron Decker Harris

Progress in theoretical physics is often made by the investigation of toy models, the model organisms of physics, which provide benchmarks for new methodologies. For complex systems, one such model is the adaptive voter model. Despite its…

动力系统 · 数学 2014-10-24 Holly Silk , Güven Demirel , Martin Homer , Thilo Gross

Stochastic reaction networks are a fundamental model to describe interactions between species where random fluctuations are relevant. The master equation provides the evolution of the probability distribution across the discrete state space…

分子网络 · 定量生物学 2021-06-15 Tabea Waizmann , Luca Bortolussi , Andrea Vandin , Mirco Tribastone

The analysis on stability and bifurcations in the macroscopic dynamics exhibited by the system of two coupled large populations comprised of $N$ stochastic excitable units each is performed by studying an approximate system, obtained by…

混沌动力学 · 物理学 2015-06-11 I. Franovic , K. Todorovic , N. Vasovic , N. Buric

Epidemic propagation on networks represents an important departure from traditional massaction models. However, the high-dimensionality of the exact models poses a challenge to both mathematical analysis and parameter inference. By using…

定量方法 · 定量生物学 2023-02-07 István Z. Kiss , Luc Berthouze , Wasiur R. KhudaBukhsh

We study binary state dynamics on a network where each node acts in response to the average state of its neighborhood. Allowing varying amounts of stochasticity in both the network and node responses, we find different outcomes in random…

物理与社会 · 物理学 2014-07-09 Kameron Decker Harris , Christopher M. Danforth , Peter Sheridan Dodds

Collective adaptation, whether in innovation adoption, pro-environmental or organizational change, emerges from the interplay between individual decisions and social influence. Agent-based modeling provides a useful tool for studying such…

物理与社会 · 物理学 2025-10-29 Angelika Abramiuk-Szurlej , Katarzyna Sznajd-Weron

Epidemic processes are common out-of-equilibrium phenomena of broad interdisciplinary interest. Recently, dynamic message-passing (DMP) has been proposed as an efficient algorithm for simulating epidemic models on networks, and in…

物理与社会 · 物理学 2015-09-30 Munik Shrestha , Samuel V. Scarpino , Cristopher Moore

In this paper we extend the work of Smith and Papamichail (1999) and present fast approximate Bayesian algorithms for learning in complex scenarios where at any time frame, the relationships between explanatory state space variables can be…

机器学习 · 计算机科学 2013-01-30 Raffaella Settimi , Jim Q. Smith , A. S. Gargoum

Approximate master equations are derived for the two-state $q$-voter model with independence on signed random graphs, with negative and positive weights of links corresponding to antagonistic and reinforcing interactions, respectively.…

统计力学 · 物理学 2024-02-27 Andrzej Krawiecki , Tomasz Gradowski

Adaptive voter models (AVMs) are simple mechanistic systems that model the emergence of mesoscopic structure from local networked processes driven by conflict and homophily. AVMs display rich behavior, including a phase transition from a…

物理与社会 · 物理学 2020-03-16 Philip S. Chodrow , Peter J. Mucha

The phenomena that emerge from the interaction of the stochastic opening and closing of ion channels (channel noise) with the non-linear neural dynamics are essential to our understanding of the operation of the nervous system. The effects…

神经元与认知 · 定量生物学 2012-05-29 Patricio Orio , Daniel Soudry

Approximate message passing (AMP) refers to a class of efficient algorithms for statistical estimation in high-dimensional problems such as compressed sensing and low-rank matrix estimation. This paper analyzes the performance of AMP in the…

信息论 · 计算机科学 2018-10-23 Cynthia Rush , Ramji Venkataramanan