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Energy transport in photosynthetic systems can be tremendously efficient. In particular we study exciton transport in the Fenna-Mathews-Olsen (FMO) complex found in green sulphur bacteria. The exciton dynamics and energy transfer efficiency…

化学物理 · 物理学 2019-03-27 S. A. Oh , D. F. Coker , D. A. W. Hutchinson

We combine the coherent modified Redfield theory (CMRT) with the equation of motion-phase matching approach (PMA) to calculate two-dimensional photon echo spectra for photoactive molecular complexes with an intermediate strength of the…

化学物理 · 物理学 2015-10-28 Hong-Guang Duan , Arend G. Dijkstra , Peter Nalbach , Michael Thorwart

During the first steps of photosynthesis, the energy of impinging solar photons is transformed into electronic excitation energy of the light-harvesting biomolecular complexes. The subsequent energy transfer to the reaction center is…

We study theoretically the bio-sensing capabilities of metal nanowire surface plasmons. As a specific example, we couple the nanowire to specific sites (bacteriochlorophyll) of the Fenna-Matthews-Olson (FMO) photosynthetic pigment protein…

量子物理 · 物理学 2017-01-23 Guang-Yin Chen , Neill Lambert , Yen-An Shih , Meng-Han Liu , Yueh-Nan Chen , Franco Nori

We show that the coherence between different bacteriochlorophyll-a (BChla) sites in the Fenna-Mathews-Olson complex is an essential ingredient for excitation energy transfer between various sites. The coherence delocalizes the excitation…

化学物理 · 物理学 2017-08-04 Davinder Singh , Shubhrangshu Dasgupta

We extract the site energies and spectral densities of the Fenna-Matthews-Olson (FMO) pigment protein complex of green sulphur bacteria from simulations of molecular dynamics combined with energy gap calculations. Comparing four different…

生物物理 · 物理学 2015-07-01 Xiaoqing Wang , Gerhard Ritschel , Sebastian Wüster , Alexander Eisfeld

Understanding the mechanisms of efficient and robust energy transfer in light-harvesting systems provides new insights for the optimal design of artificial systems. In this paper, we use the Fenna-Matthews-Olson (FMO) protein complex and…

化学物理 · 物理学 2011-09-27 Jianlan Wu , Fan Liu , Young Shen , Jianshu Cao , Robert J. Silbey

It is shown that energy transfer in a homogeneous fully connected quantum network is assisted by a decohering interaction with environmental spins. Analytic expressions for the transfer probabilities are obtained for the zero temperature…

量子物理 · 物理学 2014-01-28 A. Marais , I. Sinayskiy , A. Kay , F. Petruccione , A. Ekert

The photoexcitation dynamics of molecular materials on the 10-100 nm length scale depend on complex interactions between the electronic and vibrational degrees of freedom, rendering exact calculations difficult or intractable. The adaptive…

化学物理 · 物理学 2024-03-11 Brian Citty , Jacob K. Lynd , Tarun Gera , Leonel Varvelo , Doran I. G. B. Raccah

To investigate a system coupled to a harmonic oscillator bath, we propose a new approach based on a phonon number representation of the bath. Compared to the method of the hierarchical equations of motion, the new approach is…

量子物理 · 物理学 2020-01-08 M. Tokieda , K. Hagino

The conversion of an absorbed photon from the exciton energy into the reaction centre in the photosynthetic complex has a near unit efficiency. It is becoming clear that any classical model, where the exciton hopping is modeled by a…

量子物理 · 物理学 2010-06-21 Vlatko Vedral , Tristan Farrow

The excitation energy transfer (EET) in Fenna-Matthews-Olson (FMO) complex has been investigated in the presence of realistic inhomogeneous protein environment around different bacteriochlorophyll-a (BChla) sites of a 8-site monomer. We…

生物物理 · 物理学 2018-05-17 Davinder Singh , Shubhrangshu Dasgupta

We report a scalable Fortran implementation of the phaseless auxiliary-field quantum Monte Carlo (ph-AFQMC) and demonstrate its excellent performance and beneficial scaling with respect to system size. Furthermore, we investigate…

化学物理 · 物理学 2024-02-09 Z. Sukurma , M. Schlipf , M. Humer , A. Taheridehkordi , G. Kresse

We extend the scope of full configuration interaction quantum Monte Carlo (FCIQMC) to be applied to coupled fermion-boson hamiltonians, alleviating the a priori truncation in boson occupation which is necessary for many other wave function…

强关联电子 · 物理学 2022-11-09 Robert J. Anderson , Charles C. J. Scott , George H. Booth

The structure of Fenna-Matthews-Olson (FMO) light-harvesting complex has long been recognized as containing seven bacteriochlorophyll (BChl) molecules. Recently, an additional BChl molecule was discovered in the crystal structure of the FMO…

化学物理 · 物理学 2016-08-30 Ming-Jie Tao , Qing Ai , Fu-Guo Deng , Yuan-Chung Cheng

Excitation transfer through interacting systems plays an important role in many areas of physics, chemistry, and biology. The uncontrollable interaction of the transmission network with a noisy environment is usually assumed to deteriorate…

量子物理 · 物理学 2009-09-12 Filippo Caruso , Alex W. Chin , Animesh Datta , Susana F. Huelga , Martin B. Plenio

Time-resolved spectroscopy provides the main tool for analyzing the dynamics of excitonic energy transfer in light-harvesting complexes. To infer time-scales and effective coupling parameters from experimental data requires to develop…

化学物理 · 物理学 2018-11-28 Tobias Kramer , Mirta Rodriguez , Yaroslav Zelinskyy

Transient quantum dynamics in an interacting fermion-phonon system are investigated. In particular, a charge order (CO) melting after a short optical-pulse irradiation and roles of the quantum phonons on the transient dynamics are focused…

强关联电子 · 物理学 2017-09-13 Hiroshi Hashimoto , Sumio Ishihara

We analyze the role of coherent, non-perturbative system-bath interactions in a photosynthetic heat engine. Using the reaction-coordinate formalism to describe the vibrational phonon-environment in the engine, we analyze the efficiency…

化学物理 · 物理学 2018-09-19 Melina Wertnik , Alex Chin , Franco Nori , Neill Lambert

We have evaluated excitation energy transfer rates in photosyntetic complexes using the exact HEOM method and various approximate methods frequently used in the literature, namely, the F\"orster method, the Redfield method, the modified…

化学物理 · 物理学 2014-05-19 Simon Jesenko , Marko Žnidarič