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Natural populations often show enhanced genetic drift consistent with a strong skew in their offspring number distribution. The skew arises because the variability of family sizes is either inherently strong or amplified by population…

种群与进化 · 定量生物学 2022-01-13 Takashi Okada , Oskar Hallatschek

The strong Allee effect plays an important role on the evolution of population in ecological systems. One important concept is the Allee threshold that determines the persistence or extinction of the population in a long time. In general, a…

偏微分方程分析 · 数学 2024-08-05 Fanze Kong , Juncheng Wei

We consider the dynamics imposed by natural selection on the populations of two competing, sexually reproducing, haploid species. In this setting, the fitness of any genome varies over time due to the changing population mix of the…

种群与进化 · 定量生物学 2024-07-18 Yuval Rabani , Leonard J. Schulman , Alistair Sinclair

We study a continuous-time dynamical system that models the evolving distribution of genotypes in an infinite population where genomes may have infinitely many or even a continuum of loci, mutations accumulate along lineages without…

种群与进化 · 定量生物学 2009-02-03 Aubrey Clayton , Steven N. Evans

The contribution to an organism's phenotype from one genetic locus may depend upon the status of other loci. Such epistatic interactions among loci are now recognized as fundamental to shaping the process of adaptation in evolving…

种群与进化 · 定量生物学 2012-12-18 Jeremy A. Draghi , Joshua B. Plotkin

The search for high-affinity aptamers for targets such as proteins, small molecules, or cancer cells remains a formidable endeavor. Systematic Evolution of Ligands by EXponential Enrichment (SELEX) offers an iterative process to discover…

The evolutionary effect of recombination depends crucially on the epistatic interactions between linked loci. A paradigmatic case where recombination is known to be strongly disadvantageous is a two-locus fitness landscape dis- playing…

种群与进化 · 定量生物学 2012-02-13 Su-Chan Park , Joachim Krug

Motivated by present activities in (statistical) physics directed towards biological evolution, we review the interplay of three evolutionary forces: mutation, selection, and genetic drift. The review addresses itself to physicists and…

统计力学 · 物理学 2016-11-23 Ellen Baake , Wilfried Gabriel

For a genetic locus carrying a strongly beneficial allele which has just fixed in a large population, we study the ancestry at a linked neutral locus. During this ``selective sweep'' the linkage between the two loci is broken up by…

概率论 · 数学 2007-05-23 Alison Etheridge , Peter Pfaffelhuber , Anton Wakolbinger

Phylostratigraphy suggests that new genes are continually born de novo from non-genic sequences, and the genes that persist found new lineages, contributing to the adaptive evolution of organisms. While recent evidence supports the view…

种群与进化 · 定量生物学 2021-10-07 Somya Mani , Tsvi Tlusty

Tumor recurrence, driven by the evolution of drug resistance is a major barrier to therapeutic success in cancer. Resistance is often caused by genetic alterations such as point mutation, which refers to the modification of a single genomic…

种群与进化 · 定量生物学 2023-08-23 Aaron Li , Danika Kibby , Jasmine Foo

We consider the evolution of populations under the joint action of mutation and differential reproduction, or selection. The population is modelled as a finite-type Markov branching process in continuous time, and the associated…

种群与进化 · 定量生物学 2009-02-23 Ellen Baake , Hans-Otto Georgii

Maintaining genetic diversity as a means to avoid premature convergence is critical in Genetic Programming. Several approaches have been proposed to achieve this, with some focusing on the mating phase from coupling dissimilar solutions to…

神经与进化计算 · 计算机科学 2023-03-31 José Maria Simões , Nuno Lourenço , Penousal Machado

Network structure has a large impact on constant-selection evolutionary dynamics, with which multiple types of fitness (i.e., strength) compete on the network. Here we study constant-selection dynamics on two-layer networks in which the…

物理与社会 · 物理学 2024-10-08 Ruodan Liu , Naoki Masuda

Resource are often not uniformly distributed within a population. Spatial variations of concentration of a resource, change the fitness of competing strategies locally. The notion of fitness varying with respect to both genotype and…

种群与进化 · 定量生物学 2022-04-08 Hossein Nemati , Mohammad Reza Ejtehadi , Kamran Kaveh

In evolutionary game dynamics, reproductive success increases with the performance in an evolutionary game. If strategy $A$ performs better than strategy $B$, strategy $A$ will spread in the population. Under stochastic dynamics, a single…

种群与进化 · 定量生物学 2009-03-06 Philipp M. Altrock , Arne Traulsen

I study a population model in which the reproduction rate lambda is inherited with mutation, favoring fast reproducers in the short term, but conflicting with a process that eliminates agglomerations of individuals. The model is a variant…

统计力学 · 物理学 2021-06-02 Ronald Dickman

Many theoretical and experimental studies suggest that range expansions can have severe consequences for the gene pool of the expanding population. Due to strongly enhanced genetic drift at the advancing frontier, neutral and weakly…

种群与进化 · 定量生物学 2012-04-02 Remi Lehe , Oskar Hallatschek , Luca Peliti

Competition between random genetic drift and natural selection plays a central role in evolution: Whereas non-beneficial mutations often prevail in small populations by chance, mutations that sweep through large populations typically confer…

种群与进化 · 定量生物学 2009-11-13 Oskar Hallatschek , Pascal Hersen , Sharad Ramanathan , David R. Nelson

Both evolution and ecology have long been concerned with the impact of variable environmental conditions on observed levels of genetic diversity within and between species. We model the evolution of a quantitative trait under selection that…

种群与进化 · 定量生物学 2014-11-17 Hannes Svardal , Claus Rueffler , Joachim Hermisson