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The initiation of directional cell motion requires symmetry breaking that can happen both with or without external stimuli. During cell crawling, forces generated by the cytoskeleton and their transmission through mechanosensitive adhesions…

细胞行为 · 定量生物学 2023-06-02 Yuzhu Chen , David Saintillan , Padmini Rangamani

The mechanical response of cellular materials with spinodal topologies is numerically and experimentally investigated. Spinodal microstructures are generated by the numerical solution of the Cahn-Hilliard equation. Two different topologies…

材料科学 · 物理学 2019-04-16 Meng-Ting Hsieh , Bianca Endo , Yunfei Zhang , Jens Bauer , Lorenzo Valdevit

Entropic self-assembly is governed by the shape of the constituent particles, yet a priori prediction of crystal structures from particle shape alone is non-trivial for anything but the simplest of space-filling shapes. At the same time,…

软凝聚态物质 · 物理学 2023-05-16 Philipp W. A. Schönhöfer , Kai Sun , Xiaoming Mao , Sharon C. Glotzer

In this work we show that there is a direct relationship between a graph's topology and the free energy of a spin system on the graph. We develop a method of separating topological and enthalpic contributions to the free energy, and find…

统计力学 · 物理学 2017-03-01 Jeong-Mo Choi , Amy I. Gilson , Eugene I. Shakhnovich

The balance between stretching and bending deformations characterizes shape transitions of thin elastic sheets. While stretching dominates the mechanical response in tension, bending dominates in compression after an abrupt buckling…

We show that a mesoscale model, with a minimal number of parameters, can well describe the thermomechanical and mechanochemical behavior of homogeneous DNA at thermal equilibrium under tension and torque. We predict critical temperatures…

生物大分子 · 定量生物学 2015-06-22 Cristiano Nisoli , A. R. Bishop

In this work, we compute the structure and composition of the inner crust of a neutron star in the presence of a strong magnetic field, such as it can be found in magnetars. To determine the geometry and characteristics of the crust…

核理论 · 物理学 2023-05-01 Luigi Scurto , Helena Pais , Francesca Gulminelli

The mechanics of animal cells is strongly determined by stress fibers, which are contractile filament bundles that form dynamically in response to extracellular cues. Stress fibers allow the cell to adapt its mechanics to environmental…

Spatial organisation is a hallmark of all living cells, and recreating it in model systems is a necessary step in the creation of synthetic cells. It is therefore of both fundamental and practical interest to better understand the basic…

生物物理 · 物理学 2017-12-19 Jaime Agudo-Canalejo , Ramin Golestanian

We set up the statistical mechanics for a nearly flat, thermally equilibrated fluid membrane, attached to an elastic network through one of its sides. We predict that the resulting structural (inversion) asymmetry of the membrane, notably…

软凝聚态物质 · 物理学 2016-10-07 Tirthankar Banerjee , Niladri Sarkar , Abhik Basu

We use a free energy functional theory to elucidate general properties of heterogeneously ordering, fast folding proteins, and we test our conclusions with lattice simulations. We find that both structural and energetic heterogeneity can…

无序系统与神经网络 · 物理学 2009-10-31 Steven S. Plotkin , Jose N. Onuchic

We numerically study an anisotropic shape transformation of membranes under external forces for two-dimensional triangulated surfaces on the basis of Finsler geometry. The Finsler metric is defined by using a vector field, which is the…

软凝聚态物质 · 物理学 2016-03-08 Hiroshi Koibuchi , Andrey Shobukhov

The shapes of epithelial tissues result from a complex interplay of contractile forces in the cytoskeleta of the cells in the tissue, and adhesion forces between them. A host of discrete, cell-based models describe these forces by assigning…

软凝聚态物质 · 物理学 2019-02-27 Pierra A. Haas , Raymond E. Goldstein

We use the short-time inference scheme (Manikandan, Gupta and Krishnamurthy, Phys. Rev. Lett. 124, 120603, 2020), obtained within the framework of stochastic thermodynamics, to infer a lower-bound to entropy generation rate from flickering…

软凝聚态物质 · 物理学 2024-06-27 Sreekanth K Manikandan , Tanmoy Ghosh , Tithi Mandal , Arikta Biswas , Bidisha Sinha , Dhrubaditya Mitra

Epithelial monolayers are a central building block of complex organisms. Topological defects have emerged as important elements for single cell behavior in flat epithelia. Here we theoretically study such defects in a three-dimensional…

生物物理 · 物理学 2025-02-19 Oliver M. Drozdowski , Ulrich S. Schwarz

We investigate the properties of membranes under tension by Monte-Carlo simulations of a generic coarse-grained model for lipid bilayers. We give a comprising overview of the behavior of several membrane characteristics, such as the area…

生物物理 · 物理学 2010-03-17 Jörg Neder , Beate West , Peter Nielaba , Friederike Schmid

The assembly of banana-shaped rodlike proteins on membranes, and the associated membrane shape transformations, are investigated by analytical theory and coarse-grained simulations. The membrane-mediated interactions between two…

软凝聚态物质 · 物理学 2017-05-15 Hiroshi Noguchi , Jean-Baptiste Fournier

We investigate the hydrodynamic stability and the formation of patterns in a continuum model of epithelial layers, able to account for the interplay between mechanical activity, lateral adhesion and the $6-$fold orientational order…

软凝聚态物质 · 物理学 2025-02-19 Josep-Maria Armengol-Collado , Leonardo Puggioni , Livio N. Carenza , Luca Giomi

We present the results of our comprehensive structural investigation performed on single crystals of CePtIn4 grown from In flux in a platelet-like morphology. They were found to crystalize in an orthorhombic structure having space group…

Using a minimal model of cells or cohesive cell layers as continuum active elastic media, we examine the effect of substrate thickness and stiffness on traction forces exerted by strongly adhering cells. We obtain a simple expression for…

软凝聚态物质 · 物理学 2015-06-04 Shiladitya Banerjee , M. Cristina Marchetti