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We investigate the slow time scales that arise from aging of the paths during the process of path aggregation. This is studied using Monte-Carlo simulations of a model aiming to describe the formation of fascicles of axons mediated by…

生物物理 · 物理学 2015-05-13 Debasish Chaudhuri , Peter Borowski , P. K. Mohanty , Martin Zapotocky

In this paper we develop a probabilistic micro-scale compartmental model and use it to study macro-scale properties of axonal transport, the process by which intracellular cargo is moved in the axons of neurons. By directly modeling the…

生物物理 · 物理学 2011-05-24 Lea Popovic , Scott A. McKinley , Michael C. Reed

A single axon can generate branches connecting with plenty synaptic targets. Process of branching is very important for making connections in central nervous system. The interstitial branching along primary axon shaft occurs during nervous…

神经元与认知 · 定量生物学 2013-04-25 Y. Suleymanov , F. Gafarov , N. Khusnutdinov

Neuronal circuits arise as axons and dendrites extend, navigate, and connect to target cells. Axonal growth, in particular, integrates deterministic guidance from substrate mechanics and geometry with stochastic fluctuations generated by…

生物物理 · 物理学 2025-10-10 Cristian Staii

The formation of neuron networks is a process of fundamental importance for understanding the development of the nervous system and for creating biomimetic devices for tissue engineering and neural repair. The basic process that controls…

细胞行为 · 定量生物学 2022-05-16 Ilya Yurchenko , Matthew Farwell , Donovan D. Brady , Cristian Staii

During neurodevelopment, neuronal axons navigate through the extracellular environment, guided by various cues to establish connections with distant target cells. Among other factors, axon trajectories are influenced by heterogeneities in…

生物物理 · 物理学 2025-09-09 Christoforos Kassianides , Alain Goriely , Hadrien Oliveri

Neural connectivity at the cellular and mesoscopic level appears very specific and is presumed to arise from highly specific developmental mechanisms. However, there are general shared features of connectivity in systems as different as the…

神经元与认知 · 定量生物学 2009-12-06 Marcus Kaiser , Claus C. Hilgetag , Arjen van Ooyen

Despite significant advances in understanding neuronal development, a fully quantitative framework that integrates intracellular mechanisms with environmental cues during axonal growth remains incomplete. Here, we present a unified…

神经元与认知 · 定量生物学 2025-05-26 Kyle Cheng , Udathari Kumarasinghe , Cristian Staii

We study a mixture of extensile and contractile cells using a vertex model extended to include active nematic stresses. The two cell populations phase separate over time. While phase separation strengthens monotonically with an increasing…

软凝聚态物质 · 物理学 2024-10-11 Jan Rozman , Julia M. Yeomans

A one-dimensional continuum-mechanical model of axonal elongation due to assembly of tubulin dimers in the growth cone is presented. The conservation of mass leads to a coupled system of three differential equations. A partial differential…

细胞行为 · 定量生物学 2015-12-21 S. Diehl , E. Henningsson , A. Heyden , S. Perna

Early brain connectivity development consists of multiple stages: birth of neurons, their migration and the subsequent growth of axons and dendrites. Each stage occurs within a certain period of time depending on types of neurons and…

神经元与认知 · 定量生物学 2015-03-16 Sol Lim , Marcus Kaiser

Neuronal networks constitute a special class of dynamical systems, as they are formed by individual geometrical components, namely the neurons. In the existing literature, relatively little attention has been given to the influence of…

神经元与认知 · 定量生物学 2015-05-13 Sebastian Ahnert , Luciano da Fontoura Costa

The cohesive collective motion (flocking, swarming) of autonomous agents is ubiquitously observed and exploited in both natural and man-made settings, thus, minimal models for its description are essential. In a model with continuous space…

统计力学 · 物理学 2015-01-12 Illes J. Farkas , Jeromos Kun , Yi Jin , Gaoqi He , Mingliang Xu

We study the spatial patterns formed by a system of interacting particles where the mobility of any individual is determined by the population crowding at two different spatial scales. In this way we model the behavior of some biological…

The main goal of this study is to propose a mathematical model describing paths of the axon growth cones and differences in the behavior of normal and mutant axons. We introduce a probabilistic model for axon growing, such that each family…

神经元与认知 · 定量生物学 2015-12-09 Elena Zhizhina , Sergey Komech , Xavier Descombes

We introduce and theoretically investigate a minimal particle-based model for a new class of active matter where particles exhibit directional, volume-conserving division in confinement while interacting sterically, mimicking cells in early…

软凝聚态物质 · 物理学 2024-10-01 Samantha R. Lish , Lukas Hupe , Ramin Golestanian , Philip Bittihn

This work analyzes fractional continuous-time random walks on two-layer multiplexes. A node-centric dynamics is used, in which it is assumed a Poisson distribution of a walker to become active, while a jump to one of its neighbors depends…

物理与社会 · 物理学 2020-01-29 Alfonso Allen-Perkins , Roberto F. S. Andrade

This paper models the dynamics of a large set of interacting neurons within the framework of statistical field theory. We use a method initially developed in the context of statistical field theory [44] and later adapted to complex systems…

神经元与认知 · 定量生物学 2022-05-25 Pierre Gosselin , Aïleen Lotz , Marc Wambst

In this paper we present a simple microscopic stochastic model describing short term plasticity within a large homogeneous network of interacting neurons. Each neuron is represented by its membrane potential and by the residual calcium…

概率论 · 数学 2020-01-29 Antonio Galves , Eva Löcherbach , Christophe Pouzat , Errico Presutti

Axonal growth and the formation of synaptic connections are key steps in the development of the nervous system. Here we present experimental and theoretical results on axonal growth and interconnectivity in order to elucidate some of the…

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