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Nearly-logarithmic decay is identified in the data for the mean-squared displacement of the colloidal hard-sphere system at the liquid-glass transition [v. Megen et. al, Phys. Rev. E 58, 6073(1998)]. The solutions of mode-coupling theory…

软凝聚态物质 · 物理学 2007-05-23 Matthias Sperl

A quantitative understanding of aggregation mechanisms leading to the formation of inorganic nanoparticles (NPs) and protein composites in aqueous media is of paramount interest for colloid chemistry. In particular, the interactions between…

Inelastic x-ray scattering and Brillouin light scattering measurements of the dynamic structure factor of liquid hydrogen fluoride have been performed in the temperature range$ T=214\div 283 K$. The data, analysed using a viscoelastic model…

无序系统与神经网络 · 物理学 2016-08-31 R. Angelini , P. Giura , D. Fioretto , G. Monaco , G. Ruocco , F. Sette

Studying the properties of the solvent around proteins, we propose a much more sophisticated model of solvation than temperature-independent pairwise interactions between monomers, as is used commonly in lattice representations. We applied…

软凝聚态物质 · 物理学 2009-11-07 Olivier Collet

We use large-scale molecular dynamics simulations of a simple glass-forming system to investigate how its liquid-gas phase separation kinetics depends on temperature. A shallow quench leads to a fully demixed liquid-gas system whereas a…

无序系统与神经网络 · 物理学 2014-05-16 Vincent Testard , Ludovic Berthier , Walter Kob

Molecular dynamics simulations are performed to investigate heterogeneous dynamics in amorphous glassy materials under oscillatory shear strain. We consider three-dimensional binary Lennard-Jones mixture well below the glass transition…

软凝聚态物质 · 物理学 2013-05-10 Nikolai V. Priezjev

We report an extensive and systematic investigation of the multi-point and multi-time correlation functions to reveal the spatio-temporal structures of dynamic heterogeneities in glass-forming liquids. Molecular dynamics simulations are…

软凝聚态物质 · 物理学 2013-01-04 Kang Kim , Shinji Saito

The unbinding process of a protein-ligand complex of major biological interest was investigated by means of a computational approach at atomistic classical mechanical level. An energy minimisation-based technique was used to determine the…

生物物理 · 物理学 2009-11-13 Elsa S. Henriques , Andrey V. Solov'yov

We study the enzymatic degradation of an elastic fiber under tension using an an isotropic random-walk model, coupled with binding-unbinding reactions that weaken the fiber. The fiber is represented by a chain of elastic springs in series,…

统计力学 · 物理学 2009-10-08 Ascânio D. Araújo , Arnab Majumdar , Harikrishnan Parame swaran , Béla Suki

The solidification behavior of liquid metal in a container under rapid cooling process is one of the major concerns to be analyzed. In order to analyze its fundamental behavior, a three- dimensional (3D) fluid dynamics simulation was…

流体动力学 · 物理学 2013-09-18 Raden Ahnaf Faqih S , Christian Fredy Naa

Randomly disordered (polydomain) liquid crystalline elastomers align under stress. We study the dynamics of stress relaxation before, during and after the Polydomain-Monodomain transition. The results for different materials show the…

软凝聚态物质 · 物理学 2016-08-31 S. M. Clarke , E. M. Terentjev

Recently, different numerical studies of coarsening in disordered systems have shown the existence of a crossover from an initial, transient, power-law domain growth to a slower, presumably logarithmic, growth. However, due to the very slow…

统计力学 · 物理学 2013-04-01 Nasrin Afzal , Michel Pleimling

We study the thermodynamic behavior of a simple off-lattice model for protein folding. The model is two-dimensional and has two different ``amino acids''. Using numerical simulations of all chains containing eight or ten monomers, we…

chem-ph · 物理学 2009-10-28 Anders Irbäck , Frank Potthast

We simulate the dynamics of a disordered interacting spin chain subject to a quasi-periodic time-dependent drive, corresponding to a stroboscopic Fibonacci sequence of two distinct Hamiltonians. Exploiting the recursive drive structure, we…

无序系统与神经网络 · 物理学 2018-02-26 Philipp T. Dumitrescu , Romain Vasseur , Andrew C. Potter

The understanding of glassy dynamics above the devitrification temperature of a glass remains poorly understood. Here, we use real-time AFM imaging to build a spatio-temporal map of the relaxation dynamics of a highly stable glass into its…

Using a simple three-dimensional lattice copolymer model and Monte Carlo dynamics, we study the collapse and folding of protein-like heteropolymers. The polymers are 27 monomers long and consist of two monomer types. Although these chains…

凝聚态物理 · 物理学 2009-10-22 Nicholas D. Socci , Jose' Nelson Onuchic

We present a detailed dynamic light scattering study on the phase separation in the ocular lens emerging during cold cataract development. Cold cataract is a phase separation effect that proceeds via spinodal decomposition of the lens…

软凝聚态物质 · 物理学 2009-11-13 V. Petta , N. Pharmakakis , G. N. Papatheodorou , S. N. Yannopoulos

We have investigated the relaxational dynamics for a protein model at various temperatures. Theoretical analysis of this model in conjunction with numerical simulations suggests several relaxation regimes, including a single exponential, a…

统计力学 · 物理学 2009-10-31 Maksim Skorobogatiy , Hong Guo , Martin Zuckermann

To understand the non-exponential relaxation associated with solvation dynamics in the ionic liquid 1-ethyl-3-methylimidazolium hexafluorophosphate, we study power spectra of the fluctuating Franck-Condon energy gap of a diatomic probe…

统计力学 · 物理学 2009-11-13 Daun Jeong , M. Y. Choi , YounJoon Jung , Hyung J. Kim

Anomalous diffusion in liquids and the solid-liquid phase transition (melting) are studied in two-dimensional Yukawa systems. The self-intermediate scattering function (self-ISF), calculated from simulation data, exhibits a temporal decay,…

等离子体物理 · 物理学 2011-04-20 Yan Feng , J. Goree , Bin Liu