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We study the dynamics of particles in a multi-component 2d Lennard-Jones (LJ) fluid in the limiting case where {\it all the particles are different} (APD). The equilibrium properties of this APD system were studied in our earlier work…

软凝聚态物质 · 物理学 2016-06-22 Lenin S. Shagolsem , Yitzhak Rabin

Slow dynamics in an amorphous quasi-two-dimensional complex plasma, comprised of microparticles of two different sizes, was studied experimentally. The motion of individual particles was observed using video microscopy, and the self-part of…

等离子体物理 · 物理学 2020-04-15 Cheng-Ran Du , Vladimir Nosenko , Hubertus M. Thomas , Yi-Fei Lin , Gregor E. Morfill , Alexei V. Ivlev

Hybrid particle-field molecular dynamics combines standard molecular potentials with density-field models into a computationally efficient methodology that is well-adapted for the study of mesoscale soft matter systems. Here, we introduce a…

计算物理 · 物理学 2020-07-06 Sigbjørn Løland Bore , Michele Cascella

Glassy, nonexponential relaxations in globular proteins are typically attributed to conformational behaviors that are missing from intrinsically disordered proteins. Yet, we show that single molecules of a disordered-protein construct…

软凝聚态物质 · 物理学 2020-07-30 Ian L. Morgan , Ram Avinery , Gil Rahamim , Roy Beck , Omar A. Saleh

We present a model for the description of orientational relaxation in hydrogen-bonding liquids. The model contains two relaxation parameters which regulate the intensity and efficiency of dissipation, as well as the memory function which is…

软凝聚态物质 · 物理学 2007-05-23 M. F. Gelin , D. S. Kosov

We present a stochastic phase-field model for multicomponent lipid bilayers that explicitly accounts for the quasi-two-dimensional hydrodynamic environment unique to a thin fluid membrane immersed in aqueous solution. Dynamics over a wide…

软凝聚态物质 · 物理学 2011-05-26 Brian A. Camley , Frank L. H. Brown

We present detailed analytical studies on the zero temperature coarsening dynamics in an Ising spin chain in presence of a dynamically induced field that favors locally the `-' phase compared to the `+' phase. We show that the presence of…

统计力学 · 物理学 2009-11-07 Satya N. Majumdar , David S. Dean

We use computer simulations to study the dynamics of a physical gel at high densities where gelation and the glass transition interfere. We report and provide detailed physical understanding of complex relaxation patterns for time…

软凝聚态物质 · 物理学 2010-05-07 Pinaki Chaudhuri , Ludovic Berthier , Pablo I. Hurtado , Walter Kob

We present an extensive analysis of the relaxation dynamics of entangled linear polymer melts via long-time molecular dynamics simulations of a generic bead-spring model. We study the mean-squared displacements, the autocorrelation function…

软凝聚态物质 · 物理学 2025-01-17 Alireza F. Behbahani , Friederike Schmid

The adsorption dynamics of a colloidal particle at a fluid interface is studied theoretically and numerically, documenting distinctly different relaxation regimes. The adsorption of a perfectly smooth particle is characterized by a fast…

软凝聚态物质 · 物理学 2017-07-18 Carlos E. Colosqui , Jeffrey F. Morris , Joel Koplik

We propose to combine a mean field approach with all atom molecular dynamics into a multistage algorithm that can model protein folding and dynamics over very long time periods yet with atomic level precision. As an example we investigate…

生物大分子 · 定量生物学 2017-03-15 Jiaojiao Liu , Jin Dai , Jianfeng He , Antti J. Niemi , Nevena Ilieva

Molecular dynamic (MD) simulations are applied to investigate the dependency of the kinetic friction coefficient on the temperature at the nano-scale. The system is comprised of an aluminum spherical particle consisting of 32000 atoms in an…

数据分析、统计与概率 · 物理学 2023-11-08 Rasoul Kheiri , Alexey A Tsukanov

Theoretical studies of protein folding on lattice models relie on the assumption that water close to amino-acids is always in thermal equilibrium all along the folding pathway. Within this framework, it has always been considered that…

生物物理 · 物理学 2012-02-08 Olivier Collet

We propose a simple microscopic model of molecular dynamics simulation to study orientational glass in three dimensions. We present simulation results for mixtures of mildly anisotropic particles and spherical impurities. We realize fcc…

软凝聚态物质 · 物理学 2012-10-29 Kyohei Takae , Akira Onuki

Stress relaxation following deformation of an entangled polymeric liquid is thought to be affected by transient reforming of chain entanglements. In this work, we use single molecule techniques to study the relaxation of individual polymers…

软凝聚态物质 · 物理学 2018-07-04 Yuecheng Zhou , Charles M. Schroeder

By systematically investigating the relaxation behavior of a model metallic glass based on the extensive molecular dynamics (MD) simulations combined with the dynamic mechanical spectroscopy method, a pronounced ultra-low temperature peak…

材料科学 · 物理学 2020-02-25 B. Wang , L. J. Wang , B. S. Shang , X. Q. Gao , Y. Yang , H. Y. Bai , M. X. Pan , W. H. Wang , P. F. Guan

The interrelation of dynamic processes active on separated time-scales in glasses and viscous liquids is investigated using a model displaying two time-scale bifurcations both between fast and secondary relaxation and between secondary and…

无序系统与神经网络 · 物理学 2015-03-19 Andrea Crisanti , Luca Leuzzi , Matteo Paoluzzi

The molasses tail in dense hard core fluids is investigated by extensive event-driven molecular dynamics simulation through the orientational autocorrelation functions. Near the fluid-solid phase transition, there exist three regimes in the…

统计力学 · 物理学 2010-07-14 Masaharu Isobe , Berni J. Alder

We propose a new mathematical tool for the study of transport properties of models for lattice vibrations in crystalline solids. By replication of dynamical degrees of freedom, we aim at a new dynamical system where the "local" dynamics can…

数学物理 · 物理学 2015-06-17 Jani Lukkarinen

The incoherent dynamic structure factor of ortho-terphenyl has been measured by neutron time-of-flight and backscattering technique in the pressure range from 0.1 MPa to 240 MPa for temperatures between 301 K and 335 K. Tagged-particle…

统计力学 · 物理学 2011-04-05 A. Toelle , H. Schober , J. Wuttke , F. Fujara