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Cellular signaling networks have evolved to cope with intrinsic fluctuations, coming from the small numbers of constituents, and the environmental noise. Stochastic chemical kinetics equations govern the way biochemical networks process…

定量方法 · 定量生物学 2009-11-13 Yueheng Lan , Peter G. Wolynes , Garegin A. Papoian

We experimentally study the fluctuations of the work done by an external Gaussian random force on two different stochastic systems coupled to a thermal bath: a colloidal particle in an optical trap and an atomic force microscopy cantilever.…

统计力学 · 物理学 2010-04-20 Juan Ruben Gomez-Solano , Ludovic Bellon , Artyom Petrosyan , Sergio Ciliberto

We perturb with an additive Gaussian white noise the Hamiltonian system associated to a cubic anharmonic oscillator. The stochastic system is assumed to start from initial conditions that guarantee the existence of a periodic solution for…

概率论 · 数学 2019-07-26 Enrico Bernardi , Alberto Lanconelli

We study the role of fluctuations in particle systems modeled by Dean-Kawasaki-type equations, which describe the evolution of particle densities in systems with Brownian motion. By comparing microscopic simulations, stochastic partial…

统计力学 · 物理学 2026-04-16 Nathan O. Silvano , Emilio Hernández-García , Cristóbal López

We study the diffusion process in a Heisenberg chain with correlated spatial disorder, with a power spectrum in the momentum space behaving as $k^{-\beta}$, using a stochastic description. It establishes a direct connection between the…

In this paper we introduce a model which provides a new approach to the phenomenon of stochastic resonance. It is based on the study of the properties of the stationary distribution of the underlying stochastic process. We derive the…

概率论 · 数学 2007-05-23 Peter Imkeller , Ilya Pavlyukevich

We consider a dynamical system which has a stable attractor and which is perturbed by an additive noise. Under some quite typical conditions, the fluctuations from the attractor are intermittent and have a probability distribution with…

混沌动力学 · 物理学 2015-02-23 Michael Wilkinson , Robin Guichardaz , Marc Pradas , Alain Pumir

The dynamics of a system formed by a finite number $N$ of globally coupled bistable oscillators and driven by external forces is studied focusing on a global variable defined as the arithmetic mean of each oscillator variable. Several…

统计力学 · 物理学 2009-11-13 David Cubero

The energy-based stochastic extension of the Schrodinger equation is perhaps the simplest mathematically rigourous and physically plausible model for the reduction of the wave function. In this article we apply a new simulation methodology…

量子物理 · 物理学 2009-11-07 Dorje Brody , Lane Hughston , Joanna Syroka

We numerically and analytically investigate the behavior of a non-equilibrium phase transition in the second Schl\"ogl autocatalytic reaction scheme. Our model incorporates both an interaction-induced phase separation and a bifurcation in…

统计力学 · 物理学 2023-11-02 Reda Tiani , Uwe C. Täuber

Given a discrete stochastic process, for example a chemical reaction system or a birth and death process, we often want to find a continuous stochastic approximation so that the techniques of stochastic differential equations may be brought…

统计力学 · 物理学 2010-09-29 Edward W. J. Wallace

Stochastic reaction-diffusion models can be analytically studied on complex networks using the linear noise approximation. This is illustrated through the use of a specific stochastic model, which displays traveling waves in its…

统计力学 · 物理学 2015-06-16 Malbor Asllani , Tommaso Biancalani , Duccio Fanelli , Alan J. McKane

Fluctuations and noise may alter the behavior of dynamical systems considerably. For example, oscillations may be sustained by demographic fluctuations in biological systems where a stable fixed point is found in the absence of noise. We…

适应与自组织系统 · 物理学 2009-11-13 Richard P. Boland , Tobias Galla , Alan J. McKane

Many systems in physics, chemistry and biology exhibit oscillations with a pronounced random component. Such stochastic oscillations can emerge via different mechanisms, for example linear dynamics of a stable focus with fluctuations,…

适应与自组织系统 · 物理学 2023-11-17 Alberto Pérez-Cervera , Boris Gutkin , Peter J. Thomas , Benjamin Lindner

The occurrence of stochastic resonance in bistable systems undergoing anomalous diffusions, which arise from density-dependent fluctuations, is investigated with emphasis on the analytical formulation of the problem as well as a possible…

统计力学 · 物理学 2021-03-16 F. Naha Nzoupe , Alain M. Dikande

We look into the fluctuations caused by disturbances in power systems. In the linearized system of the power systems, the disturbance is modeled by a Brownian motion process, and the fluctuations are described by the covariance matrix of…

系统与控制 · 电气工程与系统科学 2023-03-20 Xian Wu , Kaihua Xi , Aijie Cheng , Hai Xiang Lin , Jan H van Schuppen , Chenghui Zhang

A growing amount of evidence points to the fact that many enzymes exhibit fluctuations in their catalytic activity, which are associated with conformational changes on a broad range of timescales. The experimental study of this phenomenon,…

定量方法 · 定量生物学 2017-07-28 Ankit Gupta , Andreas Milias-Argeitis , Mustafa Khammash

We analyze three simple genetic circuits which involve transcriptional regulation and feedback: the autorepressor, the switch and the repressilator, that consist of one, two and three genes, respectively. Such systems are commonly simulated…

分子网络 · 定量生物学 2007-05-23 Ofer Biham , Nathalie Q. Balaban , Adiel Loinger , Azi Lipshtat , Hagai B. Perets

We study the stochastic kinetics of a signaling module consisting of a two-state stochastic point process with negative feedback. In the active state, a product is synthesized which increases the active-to-inactive transition rate of the…

定量方法 · 定量生物学 2007-08-09 Manoj Gopalakrishnan , Peter Borowski , Frank Jülicher , Martin Zapotocky

We study the impact of stochastic perturbations to deterministic dynamical systems using the formalism of the Ruelle response theory and explore how stochastic noise can be used to explore the properties of the underlying deterministic…

统计力学 · 物理学 2015-05-27 Valerio Lucarini