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We present new and improved fixed-parameter algorithms for computing maximum agreement forests (MAFs) of pairs of rooted binary phylogenetic trees. The size of such a forest for two trees corresponds to their subtree prune-and-regraft…

种群与进化 · 定量生物学 2015-03-19 Chris Whidden , Robert G. Beiko , Norbert Zeh

We consider the problem of allocating multiple heterogeneous resources geographically and over time to meet demands that require some subset of the available resource types simultaneously at a specified time, location, and duration. The…

最优化与控制 · 数学 2022-06-15 Arden Baxter , Pinar Keskinocak , Mohit Singh

In the knapsack interdiction problem, there are $n$ items, each with a non-negative profit, interdiction cost, and packing weight. There is also an interdiction budget and a capacity. The objective is to select a set of items to interdict…

数据结构与算法 · 计算机科学 2026-04-24 Noah Weninger

Natural Evolution Strategies (NES) is a promising framework for black-box continuous optimization problems. NES optimizes the parameters of a probability distribution based on the estimated natural gradient, and one of the key parameters…

神经与进化计算 · 计算机科学 2022-02-08 Masahiro Nomura , Isao Ono

We settle the pseudo-polynomial complexity of the Demand Strip Packing (DSP) problem: Given a strip of fixed width and a set of items with widths and heights, the items must be placed inside the strip with the objective of minimizing the…

数据结构与算法 · 计算机科学 2025-07-02 Klaus Jansen , Malin Rau , Malte Tutas

In the Maximum Duo-Preservation String Mapping problem we are given two strings and wish to map the letters of the former to the letters of the latter so as to maximise the number of duos. A duo is a pair of consecutive letters that is…

数据结构与算法 · 计算机科学 2017-05-31 Bartłomiej Dudek , Paweł Gawrychowski , Piotr Ostropolski-Nalewaja

We consider the energy minimization problem for undirected graphical models, also known as MAP-inference problem for Markov random fields which is NP-hard in general. We propose a novel polynomial time algorithm to obtain a part of its…

We develop a randomized approximation algorithm for the classical maximum coverage problem, which given a list of sets $A_1,A_2,\cdots, A_m$ and integer parameter $k$, select $k$ sets $A_{i_1}, A_{i_2},\cdots, A_{i_k}$ for maximum union…

数据结构与算法 · 计算机科学 2016-07-21 Bin Fu

Variational quantum algorithms (VQAs) have demonstrated considerable potential in solving NP-hard combinatorial problems in the contemporary near intermediate-scale quantum (NISQ) era. The quantum approximate optimisation algorithm (QAOA)…

量子物理 · 物理学 2024-05-09 Boy Choy , David J. Wales

Understanding the evolution of a set of genes or species is a fundamental problem in evolutionary biology. The problem we study here takes as input a set of trees describing {possibly discordant} evolutionary scenarios for a given set of…

数据结构与算法 · 计算机科学 2019-07-10 Cedric Chauve , Mark Jones , Manuel Lafond , Céline Scornavacca , Mathias Weller

We are concerned with the fastest possible direct numerical solution algorithm for a thin-banded or tridiagonal linear system of dimension $N$ on a distributed computing network of $N$ nodes that is connected in a binary communication tree.…

数值分析 · 数学 2018-02-02 Martin Neuenhofen

We present a novel Natural Evolution Strategy (NES) variant, the Rank-One NES (R1-NES), which uses a low rank approximation of the search distribution covariance matrix. The algorithm allows computation of the natural gradient with cost…

人工智能 · 计算机科学 2011-06-14 Yi Sun , Faustino Gomez , Tom Schaul , Juergen Schmidhuber

This paper describes an application of the Quantum Approximate Optimisation Algorithm (QAOA) to efficiently find approximate solutions for computational problems contained in the polynomially bounded NP optimisation complexity class (NPO…

量子物理 · 物理学 2021-07-28 Samuel Marsh , Jingbo Wang

In the \emph{budgeted rooted node-weighted Steiner tree} problem, we are given a graph $G$ with $n$ nodes, a predefined node $r$, two weights associated to each node modelling costs and prizes. The aim is to find a tree in $G$ rooted at $r$…

数据结构与算法 · 计算机科学 2022-11-15 Gianlorenzo D'Angelo , Esmaeil Delfaraz

It is well-know that deciding consistency for normal answer set programs (ASP) is NP-complete, thus, as hard as the satisfaction problem for classical propositional logic (SAT). The best algorithms to solve these problems take exponential…

计算机科学中的逻辑 · 计算机科学 2020-07-10 Markus Hecher , Jorge Fandinno

We design a distributed algorithm to seek generalized Nash equilibria of a robust game with uncertain coupled constraints. Due to the uncertainty of parameters in set constraints, we aim to find a generalized Nash equilibrium in the worst…

最优化与控制 · 数学 2022-04-05 Gehui Xu , Guanpu Chen , Hongsheng Qi

In the polytope membership problem, a convex polytope $K$ in $R^d$ is given, and the objective is to preprocess $K$ into a data structure so that, given a query point $q \in R^d$, it is possible to determine efficiently whether $q \in K$.…

计算几何 · 计算机科学 2018-01-11 Sunil Arya , Guilherme D. da Fonseca , David M. Mount

The paper revisits the robust $s$-$t$ path problem, one of the most fundamental problems in robust optimization. In the problem, we are given a directed graph with $n$ vertices and $k$ distinct cost functions (scenarios) defined over edges,…

数据结构与算法 · 计算机科学 2024-06-25 Shi Li , Chenyang Xu , Ruilong Zhang

This paper proposes a new algorithm for reducing Approximate Nearest Neighbor problem to Approximate Near Neighbor problem. The advantage of this algorithm is that it achieves O(log n) query time. As a reduction problem, the uery time…

数据结构与算法 · 计算机科学 2018-09-27 Hengzhao Ma , Jianzhong Li

The Steiner tree problem is one of the classic and most fundamental $\mathcal{NP}$-hard problems: given an arbitrary weighted graph, seek a minimum-cost tree spanning a given subset of the vertices (terminals). Byrka \emph{et al}. proposed…

数据结构与算法 · 计算机科学 2018-11-02 Chi-Yeh Chen
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