相关论文: Pseudoknot RNA Structures with Arc-Length $\ge 3$

We extend our recent study of K3 metrics near the $T^4/Z_2$ orbifold locus to the other torus orbifold loci. In particular, we provide several new constructions of K3 surfaces as hyper-K\"ahler quotients, which yield new formulae for K3…

In this paper we present three different results dealing with the number of $(\leq k)$-facets of a set of points: 1. We give structural properties of sets in the plane that achieve the optimal lower bound $3\binom{k+2}{2}$ of $(\leq…

Formation of base pairs between the nucleotides of an RNA sequence gives rise to a complex and often highly branched RNA structure. While numerous studies have demonstrated the functional importance of the high degree of RNA branching --…

Nonnesting permutations are permutations of the multiset $\{1,1,2,2,\dots,n,n\}$ that avoid subsequences of the form $abba$ for any $a\neq b$. These permutations have recently been studied in connection to noncrossing (also called…

For integers $n \geq k \geq 1$, the {\em Kneser graph} $K(n, k)$ is the graph with vertex-set consisting of all the $k$-element subsets of $\{1,2,\ldots,n\}$, where two $k$-element sets are adjacent in $K(n,k)$ if they are disjoint. We show…

We show using density functional calculations that quasi-one-dimensional K2Mo3As3, which is closely related to the K2Cr3As3 and has very similar superconducting properties, is not close to magnetism and has conventional s-wave…

We construct (k+-1)-regular graphs which provide sequences of expanders by adding or substracting appropriate 1-factors from given sequences of k-regular graphs. We compute numerical examples in a few cases for which the given sequences are…

A new Cr-based quasi-one-dimensional superconductor Na2Cr3As3 was synthesized by an ion-exchange method in sodium naphthalenide solution. The crystals are thread-like and the structure was analyzed by X-ray diffraction with a…

The prospects of extracting new physics signals in coherent elastic neutrino--nucleus scattering (CE$\nu$NS) processes are limited by the precision with which the underlying nuclear structure physics, embedded in the weak nuclear form…

We study the dynamic structure factor $S(k,\omega)$ of the spin-1/2 chain with long-range, power-law decaying unfrustrated (sign alternating) Heisenberg interactions $J_r \sim (-1)^{r-1} r^{-\alpha}$ by means of stochastic analytic…

Three nucleon short range correlations~(SRCs) are one of the most elusive structures in nuclei. Their observation and the subsequent study of their internal makeup will have a significant impact on our understanding of the dynamics of…

We have measured the $^{147}$Sm(\textit{n},$\alpha $) cross section from 3 eV to 500 keV and performed an $\mathcal{R}$-matrix analysis in the resolved region ($E_{n}$$<$ 700 eV) to extract $\alpha $ widths for 104 resonances. We computed…

The high-throughput short-reads RNA-seq protocols often produce paired-end reads, with the middle portion of the fragments being unsequenced. We explore if the full-length fragments can be computationally reconstructed from the sequenced…

In this work, we investigate a challenging problem, which has been considered to be an important criterion in designing codewords for DNA computing purposes, namely secondary structure avoidance in single-stranded DNA molecules. In short,…

The problem of reconstructing a sequence from the set of its length-$k$ substrings has received considerable attention due to its various applications in genomics. We study an uncoded version of this problem where multiple random sources…

We study non-isotrivial families of $K3$ surfaces in positive characteristic $p$ whose geometric generic fibers satisfy $\rho\geq21-2h$ and $h\geq3$, where $\rho$ is the Picard number and $h$ is the height of the formal Brauer group. We…

An RNA sequence is a string composed of four types of nucleotides, $A, C, G$, and $U$. The goal of the RNA folding problem is to find a maximum cardinality set of crossing-free pairs of the form $\{A,U\}$ or $\{C,G\}$ in a given RNA…

Motivation: Predicting the secondary structure of an RNA sequence is useful in many applications. Existing algorithms (based on dynamic programming) suffer from a major limitation: their runtimes scale cubically with the RNA length, and…

Let $K_m^{(3)}$ denote the complete $3$-uniform hypergraph on $m$ vertices and $S_n^{(3)}$ the $3$-uniform hypergraph on $n+1$ vertices consisting of all $\binom{n}{2}$ edges incident to a given vertex. Whereas many hypergraph Ramsey…

We present neutron total scattering and density functional theory studies on quasi-one-dimensional superconducting K$_2$Cr$_3$As$_3$ revealing a frustrated structural instability. Our first principles calculations find a significant phonon…