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The statistical mechanics of a long knotted collapsed polymer is determined by a free-energy with a knot-dependent subleading term, which is linked to the length of the shortest polymer that can hold such knot. The only other parameter…

统计力学 · 物理学 2014-12-01 Marco Baiesi , Enzo Orlandini , Attilio L. Stella

We use computer simulations to compare the dynamical behaviour of torus and even-twist knots in polymers under tension. The knots diffuse through a mechanism similar to reptation. Their friction coefficients grow linearly with average knot…

软凝聚态物质 · 物理学 2010-07-27 R. Matthews , A. A. Louis , J. M. Yeomans

Polymers are an effective test-bed for studying topological constraints in condensed matter due to a wide array of synthetically-available chain topologies. When linear and ring polymers are blended together, emergent rheological properties…

软凝聚态物质 · 物理学 2024-04-25 Daniel L. Vigil , Ting Ge , Michael Rubinstein , Thomas C. O'Connor , Gary S. Grest

The interplay of topological constraints and persistence length of ring polymers in their own melt is investigated by means of dynamical Monte Carlo simulations of a three dimensional lattice model. We ask if the results are consistent with…

统计力学 · 物理学 2009-10-31 M. Muller , J. P. Wittmer , M. E. Cates

Using extensive computer simulations, the behavior of the structural modes --- more precisely, the eigenmodes of a phantom Rouse polymer --- are characterized for a polymer in the three-dimensional repton model, and are used to study the…

软凝聚态物质 · 物理学 2015-03-18 Gerard T. Barkema , Debabrata Panja , J. M. J. van Leeuwen

The viscous flow of polymer chains in dense melts is dominated by topological constraints whenever the single chain contour length, N, becomes larger than the characteristic scale Ne, defining comprehensively the macroscopic rheological…

软凝聚态物质 · 物理学 2023-07-19 Mattia Alberto Ubertini , Angelo Rosa

We present large-scale molecular dynamics simulations for a coarse-grained model of polymer melts in equilibrium. From detailed Rouse mode analysis we show that the time-dependent relaxation of the autocorrelation function (ACF) of modes…

软凝聚态物质 · 物理学 2017-04-26 Hsiao-Ping Hsu , Kurt Kremer

An analysis of extensive simulations of interacting self-avoiding polygons on cubic lattice shows that the frequencies of different knots realized in a random, collapsed polymer ring decrease as a negative power of the ranking order, and…

统计力学 · 物理学 2007-08-21 M. Baiesi , E. Orlandini , A. L. Stella

The interplay of topological constraints, excluded volume interactions, persistence length and dynamical entanglement length in solutions and melts of linear chains and ring polymers is investigated by means of kinetic Monte Carlo…

统计力学 · 物理学 2009-10-31 M. Mueller , J. P. Wittmer , J. -L. Barrat

We report on a computational study of the statics and dynamics of long flexible linear polymers that spontaneously knot and unknot. Specifically, the equilibrium self-entanglement properties, such as the knotting probability, knot length…

软凝聚态物质 · 物理学 2013-04-15 Luca Tubiana , Angelo Rosa , Filippo Fragiacomo , Cristian Micheletti

We give two different, statistically consistent definitions of the length l of a prime knot tied into a polymer ring. In the good solvent regime the polymer is modelled by a self avoiding polygon of N steps on cubic lattice and l is the…

统计力学 · 物理学 2015-06-25 B. Marcone , E. Orlandini , A. L. Stella , F. Zonta

Some recent results on the rotational dynamics of polymers are reviewed and extended. We focus here on the relaxation of a polymer, either flexible or semiflexible, initially wrapped around a rigid rod. We also study the steady polymer…

统计力学 · 物理学 2015-06-22 Jean-Charles Walter , Michiel Laleman , Marco Baiesi , Enrico Carlon

Using a lattice-based Monte Carlo code for simulating self-avoiding flexible polymers in three dimensions in the absence of explicit hydrodynamics, we study their Rouse modes. For self-avoiding polymers, the Rouse modes are not expected to…

软凝聚态物质 · 物理学 2009-10-20 Debabrata Panja , Gerard T. Barkema

We present exact spatio-temporal correlation functions of a Rouse polymer chain submerged in a fluid having planar mixed flow, in the steady state. Using these correlators, determination of the time scale distribution functions associated…

统计力学 · 物理学 2011-09-06 Dipjyoti Das , Sanjib Sabhapandit , Dibyendu Das

The dynamics of a polymer ring enclosing a constant {\sl algebraic} area is studied. The constraint of a constant area is found to couple the dynamics of the two Cartesian components of the position vector of the polymer ring through the…

软凝聚态物质 · 物理学 2009-11-10 Arti Dua , Thomas A. Vilgis

Simulations in which a globular ring polymer with delocalized knots is separated in two interacting loops by a slipping link, or in two non-interacting globuli by a wall with a hole, show how the minimal crossing number of the knots…

软凝聚态物质 · 物理学 2011-10-17 M. Baiesi , E. Orlandini , A. L. Stella , F. Zonta

Linear polymers are represented as chains of hopping reptons and their motion is described as a stochastic process on a lattice. This admittedly crude approximation still catches essential physics of polymer motion, i.e. the universal…

统计力学 · 物理学 2015-05-18 J. M. J. van Leeuwen , Andrzej Drzewinski

We study the static and dynamical properties of a harmonically confined Rouse polymer coupled to a fluctuating correlated medium, which affect each other reciprocally during their stochastic evolution. The medium is modeled by a scalar…

软凝聚态物质 · 物理学 2025-10-09 Pietro Luigi Muzzeddu , Davide Venturelli , Andrea Gambassi

Large scale molecular dynamics simulations on graphic processing units (GPUs) are employed to study the scaling behavior of ring polymers with various topological constraints in melts. Typical sizes of rings containing $3_1$, $5_1$ knots…

软凝聚态物质 · 物理学 2015-09-04 Benjamin Trefz , Peter Virnau

Spontaneous formation of knots in long polymers at equilibrium is inevitable but becomes rare in sufficiently short chains. Here, we show that knotting and knot complexity increase by orders of magnitude in diblock polymers with a fraction…

软凝聚态物质 · 物理学 2024-07-11 Marin Vatin , Enzo Orlandini , Emanuele Locatelli
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