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For a family of models of evolving population under selection, which can be described by noisy traveling wave equations, the coalescence times along the genealogical tree scale like $\log^\alpha N$, where $N$ is the size of the population,…

无序系统与神经网络 · 物理学 2007-05-23 E. Brunet , B. Derrida , A. H. Mueller , S. Munier

We consider a stochastic model describing a constant size $N$ population that may be seen as a directed polymer in random medium with $N$ sites in the transverse direction. The population dynamics is governed by a noisy traveling wave…

概率论 · 数学 2016-06-07 Aser Cortines

In mathematical population genetics, it is well known that one can represent the genealogy of a population by a tree, which indicates how the ancestral lines of individuals in the population coalesce as they are traced back in time. As the…

概率论 · 数学 2014-02-20 Götz Kersting , Jason Schweinsberg , Anton Wakolbinger

In a series of recent works it has been shown that a class of simple models of evolving populations under selection leads to genealogical trees whose statistics are given by the Bolthausen-Sznitman coalescent rather than by the well known…

无序系统与神经网络 · 物理学 2015-05-28 Éric Brunet , Bernard Derrida

Coalescent theory combined with statistical modeling allows us to estimate effective population size fluctuations from molecular sequences of individuals sampled from a population of interest. When sequences are sampled serially through…

种群与进化 · 定量生物学 2021-11-02 Michael D. Karcher , Marc A. Suchard , Gytis Dudas , Vladimir N. Minin

We review the statistical properties of the genealogies of a few models of evolution. In the asexual case, selection leads to coalescence times which grow logarithmically with the size of the population in contrast with the linear growth of…

种群与进化 · 定量生物学 2015-06-04 Éric Brunet , Bernard Derrida

Evolution occurs in populations of reproducing individuals. The structure of a biological population affects which traits evolve. Understanding evolutionary game dynamics in structured populations is difficult. Precise results have been…

种群与进化 · 定量生物学 2017-08-16 Benjamin Allen , Gabor Lippner , Yu-Ting Chen , Babak Fotouhi , Naghmeh Momeni , Martin A. Nowak , Shing-Tung Yau

This paper is concerned with the globally exponential stability of traveling wave fronts for a class of population dynamics model with quiescent stage and delay. First, we establish the comparison principle of solutions for the population…

动力系统 · 数学 2020-11-26 Yonghui Zhou , Shuguan Ji

If one goes backward in time, the number of ancestors of an individual doubles at each generation. This exponential growth very quickly exceeds the population size, when this size is finite. As a consequence, the ancestors of a given…

生物物理 · 物理学 2007-05-23 B. Derrida , S. C. Manrubia , D. H. Zanette

A well-established model for the genealogy of a large population in equilibrium is Kingman's coalescent. For the population together with its genealogy evolving in time, this gives rise to a time-stationary tree-valued process. We study the…

概率论 · 数学 2010-05-18 Peter Pfaffelhuber , Anton Wakolbinger , Heinz Weisshaupt

Spatial models where growth is limited to the edge of the expansions have been instrumental to understand the population dynamics and the clone size distribution in growing cellular populations, such as microbial colonies and avascular…

种群与进化 · 定量生物学 2022-06-08 Armin Eghdami , Jayson Paulose , Diana Fusco

We study a model of selection acting on a diploid population (one in which each individual carries two copies of each gene) living in one spatial dimension. We suppose a particular gene appears in two forms (alleles) $A$ and $a$, and that…

概率论 · 数学 2020-09-09 Alison Etheridge , Sarah Penington

We analyse the statistical properties of genealogical trees in a neutral model of a closed population with sexual reproduction and non-overlapping generations. By reconstructing the genealogy of an individual from the population evolution,…

凝聚态物理 · 物理学 2009-10-31 Bernard Derrida , Susanna C. Manrubia , Damian H. Zanette

Evolutionary models for populations of constant size are frequently studied using the Moran model, the Wright-Fisher model, or their diffusion limits. When evolution is neutral, a random genealogy given through Kingman's coalescent is used…

种群与进化 · 定量生物学 2012-07-31 Peter Pfaffelhuber , Benedikt Vogt

When a biological population expands into new territory, genetic drift develops an enormous influence on evolution at the propagating front. In such range expansion processes, fluctuations in allele frequencies occur through stochastic…

生物物理 · 物理学 2018-12-24 Sherry Chu , Mehran Kardar , David R. Nelson , Daniel A. Beller

We consider neutral evolution of a large population subject to changes in its population size. For a population with a time-variable carrying capacity we have computed the distributions of the total branch lengths of its sample genealogies.…

种群与进化 · 定量生物学 2012-06-13 A. Eriksson , B. Mehlig , M. Rafajlovic , S. Sagitov

We consider a class of density-dependent branching processes which generalises exponential, logistic and Gompertz growth. A population begins with a single individual, grows exponentially initially, and then growth may slow down as the…

概率论 · 数学 2022-04-11 David Cheek

We study a universal object for the genealogy of a sample in populations with mutations: the critical birth-death process with Poissonian mutations, conditioned on its population size at a fixed time horizon. We show how this process arises…

概率论 · 数学 2014-07-30 G. Achaz , C. Delaporte , A. Lambert

When an advantageous mutation occurs in a population, the favorable allele may spread to the entire population in a short time, an event known as a selective sweep. As a result, when we sample $n$ individuals from a population and trace…

概率论 · 数学 2007-05-23 Rick Durrett , Jason Schweinsberg

Several populational networks present complex topologies when implemented in evolutionary algorithms. A common feature of these topologies is the emergence of a power law. Power law behavior with different scaling factors can also be…

统计计算 · 统计学 2022-03-08 Francisco Leonardo Bezerra Martins , José Cláudio do Nascimento
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