Energy Localization in the Peyrard-Bishop DNA model
摘要
We study energy localization on the oscillator-chain proposed by Peyrard and Bishop to model the DNA. We search numerically for conditions with initial energy in a small subgroup of consecutive oscillators of a finite chain and such that the oscillation amplitude is small outside this subgroup for a long timescale. We use a localization criterion based on the information entropy and we verify numerically that such localized excitations exist when the nonlinear dynamics of the subgroup oscillates with a frequency inside the reactive band of the linear chain. We predict a mimium value for the Morse parameter (the only parameter of our normalized model), in agreement with the numerical calculations (an estimate for the biological value is ). For supercritical masses, we use canonical perturbation theory to expand the frequencies of the subgroup and we calculate an energy threshold in agreement with the numerical calculations.
引用
@article{arxiv.nlin/0405039,
title = {Energy Localization in the Peyrard-Bishop DNA model},
author = {Jayme De Luca and Elso Drigo Filho and Antonio Ponno and Jose Roberto Ruggiero},
journal= {arXiv preprint arXiv:nlin/0405039},
year = {2009}
}