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The detection of fluorescence with submolecular resolution enables the exploration of spatially varying photon yields and vibronic properties at the single-molecule level. By placing individual polycyclic aromatic hydrocarbon molecules into…

Mesoscale and Nanoscale Physics · Physics 2018-08-01 Jörg Kröger , Benjamin Doppagne , Fabrice Scheurer , Guillaume Schull

The random motion of molecules in living cells has consistently been reported to deviate from standard Brownian motion, a behavior coined as ``anomalous diffusion''. Fluorescence Correlation Spectroscopy (FCS) is a powerful method to…

Quantitative Methods · Quantitative Biology 2024-07-18 Nathan Quiblier , Jan-Michael Rye , Pierre Leclerc , Henri Truong , Abdelkrim Hannou , Laurent Héliot , Hugues Berry

Miniature atomic beams can provide new functionalities for atom based sensing instruments such as atomic clocks and interferometers. We recently demonstrated a planar silicon device for generating well-collimated thermal atomic beams [Nat…

Atomic Physics · Physics 2020-07-01 Chao Li , Bochao Wei , Xiao Chai , Jeremy Yang , Anosh Daruwalla , Farrokh Ayazi , C. Raman

We investigate the dependence on length of optical fibres used in astronomy, especially the focal ratio degradation (FRD) which places constraints on the performance of fibre-fed spectrographs used for multiplexed spectroscopy. To this end…

Instrumentation and Methods for Astrophysics · Physics 2015-05-18 C. L. Poppett , J. R. Allington-Smith

Single-molecule fluorescence spectroscopy is a powerful method that avoids ensemble averaging, but its temporal resolution is limited by the fluorescence lifetime to nanoseconds at most. At the ensemble level, two-dimensional spectroscopy…

Optics · Physics 2024-10-11 Sanchayeeta Jana , Simon Durst , Markus Lippitz

Scanning probe microscopy (SPM) images of regularly arranged spatially periodic objects can be processed crystallographically. The resulting information may be used to remove from the SPM image distortions that are due to a less than…

Materials Science · Physics 2020-12-16 Peter Moeck

We study biasing as a physical phenomenon by analysing power spectra (PS) and correlation functions (CF) of simulated galaxy samples and dark matter (DM) samples. We apply an algorithm based on the local densities of particles, $\rho$, to…

Cosmology and Nongalactic Astrophysics · Physics 2021-11-03 Jaan Einasto

Tracking single fluorescent molecules has offered resolution into dynamic molecular processes at the single-molecule level. This perspective traces the evolution of single-molecule tracking, highlighting key developments across various…

Biological Physics · Physics 2026-02-24 Lance W. Q. Xu , Steve Pressé

Fluorescence imaging is indispensable to biology and neuroscience. The need for large-scale imaging in freely behaving animals has further driven the development in miniaturized microscopes (miniscopes). However, conventional microscopes /…

Optics · Physics 2020-10-29 Yujia Xue , Ian G. Davison , David A. Boas , Lei Tian

The plasmonic tip of a scanning tunnelling microscope (STM) is functionalized with a single fluorescent molecule and is scanned on a plasmonic substrate. The tunneling current flowing through the tip-molecule-substrate junction generates a…

The width and shape of photon burst histograms pose significant limitations to the identification of single molecules in micro/nano-fluidic channels, and the nature of these histograms is not fully understood. To reach a deeper…

Data Analysis, Statistics and Probability · Physics 2011-10-18 Lazar L. Kish , Jun Kameoka , Claes G. Granqvist , Laszlo B. Kish

Deblurring is a fundamental inverse problem in bioimaging. It requires modelling the point spread function (PSF), which captures the optical distortions entailed by the image formation process. The PSF limits the spatial resolution…

Image and Video Processing · Electrical Eng. & Systems 2019-03-04 Denis K. Samuylov , Prateek Purwar , Gábor Székely , Grégory Paul

Single molecule microscopy has proven to be an effective tool to characterize the fluorophore-plasmonic structure interaction. However, as specific information is hidden in the emission, sophisticated evaluation is required. Here we…

Optics · Physics 2024-01-11 T. Novák , P. Bíró , Gy. Ferenc , D. Ungor , E. Czvik , Á. Deák , L. Janovák , M. Erdélyi

Fundamental properties of light unavoidably impose features on images collected using fluorescence microscopes. Modeling these features is ever more important in quantitatively interpreting microscopy images collected at scales on par or…

Fluctuation in fluorescence emission of immobilized single molecule is typically ascribed to the chromophore's intrinsic structural conformations and the influence of local environmental factors. Despite extensive research over several…

Chemical Physics · Physics 2024-08-07 Aranyak Sarkar , Vinu Namboodiri , Manoj Kumbhakar

I review single-molecule experiments (SME) in biological physics. Recent technological developments have provided the tools to design and build scientific instruments of high enough sensitivity and precision to manipulate and visualize…

Soft Condensed Matter · Physics 2016-08-31 F. Ritort

Motion models (i.e., transition probability densities) are often deduced from fluorescence widefield tracking experiments by analyzing single-particle trajectories post-processed from data. This analysis immediately raises the question: To…

Biological Physics · Physics 2025-07-29 Zachary H. Hendrix , Lance W. Q. Xu , Steve Pressé

We investigate the properties of a single-view fluorescence microscope in a 4$f$ geometry when imaging fluorescent dipoles without using the monopole or scalar approximations. We show that this imaging system has a spatio-angular band…

The Point Spread Function (PSF) is a key figure of merit for specifying the angular resolution of optical systems and, as the demand for higher and higher angular resolution increases, the problem of surface finishing must be taken…

Instrumentation and Methods for Astrophysics · Physics 2016-10-04 K. Tayabaly , D. Spiga , G. Sironi , R. Canestrari , M. Lavagna , G. Pareschi

Fast Radio Bursts (FRBs), like pulsars, display radio emission from compact regions such that they can be treated as point sources. As this radiation propagates through space, they encounter sources of lensing such as a gravitational field…

High Energy Astrophysical Phenomena · Physics 2026-05-11 Zarif Kader , Matt Dobbs , Calvin Leung , Kiyoshi W. Masui , Mawson W. Sammons