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The generating functional method is employed to investigate the synchronous dynamics of Boolean networks, providing an exact result for the system dynamics via a set of macroscopic order parameters. The topology of the networks studied and…

无序系统与神经网络 · 物理学 2015-05-28 Alexander Mozeika , David Saad

We determine stability and attractor properties of random Boolean genetic network models with canalyzing rules for a variety of architectures. For all power law, exponential, and flat in-degree distributions, we find that the networks are…

分子网络 · 定量生物学 2007-05-23 Stuart Kauffman , Carsten Peterson , Björn Samuelsson , Carl Troein

We show that the problem of counting the number of $n$-variable unate functions reduces to the problem of counting the number of $n$-variable monotone functions. Using recently obtained results on $n$-variable monotone functions, we obtain…

组合数学 · 数学 2023-10-04 Aniruddha Biswas , Palash Sarkar

In this paper we propose a new approach to quantum neural networks. Our multi-layer architecture avoids the use of measurements that usually emulate the non-linear activation functions which are characteristic of the classical neural…

量子物理 · 物理学 2020-11-30 Viet Pham Ngoc , Herbert Wiklicky

The relationship between the design and functionality of molecular networks is now a key issue in biology. Comparison of regulatory networks performing similar tasks can give insights into how network architecture is constrained by the…

分子网络 · 定量生物学 2015-06-26 Ala Trusina , Kim Sneppen , Ian B. Dodd , Keith E. Shearwin , J. Barry Egan

There are several examples of spaces of univariate functions for which we have a characterization of all sets of knots which are poised for the interpolation problem. For the standard spaces of univariate polynomials, or spline functions…

数值分析 · 数学 2016-10-06 Hayk Avdalyan , Hakop Hakopian

We consider efficiency in the implementation of deep neural networks. Hardware accelerators are gaining interest as machine learning becomes one of the drivers of high-performance computing. In these accelerators, the directed graph…

机器学习 · 计算机科学 2021-04-28 George A. Constantinides

Logical models have been successfully used to describe regulatory and signaling networks without requiring quantitative data. However, existing data is insufficient to adequately define a unique model, rendering the parametrization of a…

离散数学 · 计算机科学 2019-01-24 José E. R. Cury , Pedro T. Monteiro , Claudine Chaouiya

In current practice, many image processing tasks are done sequentially (e.g. denoising, dehazing, followed by semantic segmentation). In this paper, we propose a novel multi-task neural network architecture designed for combining sequential…

计算机视觉与模式识别 · 计算机科学 2020-05-04 Ilja Gubins , Remco C. Veltkamp

The information processing abilities of a multilayer neural network with a number of hidden units scaling as the input dimension are studied using statistical mechanics methods. The mapping from the input layer to the hidden units is…

统计力学 · 物理学 2009-11-07 Michal Rosen-Zvi , Andreas Engel , Ido Kanter

We introduce an extension of the multi-instance learning problem where examples are organized as nested bags of instances (e.g., a document could be represented as a bag of sentences, which in turn are bags of words). This framework can be…

机器学习 · 计算机科学 2020-10-06 Alessandro Tibo , Manfred Jaeger , Paolo Frasconi

The recently measured yeast transcriptional network is analyzed in terms of simplified Boolean network models, with the aim of determining feasible rule structures, given the requirement of stable solutions of the generated Boolean…

分子网络 · 定量生物学 2009-11-10 Stuart Kauffman , Carsten Peterson , Björn Samuelsson , Carl Troein

Using Boolean networks as prototypical examples, the role of symmetry in the dynamics of heterogeneous complex systems is explored. We show that symmetry of the dynamics, especially in critical states, is a controlling feature that can be…

统计力学 · 物理学 2015-06-19 Shabnam Hossein , Matthew D. Reichl , Kevin E. Bassler

Biological networks such as gene regulatory networks possess desirable properties. They are more robust and controllable than random networks. This motivates the search for structural and dynamical features that evolution has incorporated…

分子网络 · 定量生物学 2024-02-16 Claus Kadelka , David Murrugarra

We investigate the expressive power of neural networks from the point of view of descriptive complexity. We study neural networks that use floating-point numbers and piecewise polynomial activation functions from two perspectives: 1) the…

计算复杂性 · 计算机科学 2025-05-12 Veeti Ahvonen , Damian Heiman , Antti Kuusisto

Nested graphs have been used in different applications, for example to represent knowledge in semantic networks. On the other hand, graphs with cycles are really important in surface reconstruction, periodic schedule and network analysis.…

组合数学 · 数学 2018-11-08 María Carrasco , Zenaida Castillo , Nerio Borges , Ramón Pino Pérez

We introduce combinatorial interpretability, a methodology for understanding neural computation by analyzing the combinatorial structures in the sign-based categorization of a network's weights and biases. We demonstrate its power through…

机器学习 · 计算机科学 2025-05-07 Micah Adler , Dan Alistarh , Nir Shavit

Boolean networks are discrete dynamical systems in which the state (zero or one) of each node is updated at each time t to a state determined by the states at time t-1 of those nodes that have links to it. When these systems are used to…

分子网络 · 定量生物学 2012-02-28 Andrew Pomerance , Michelle Girvan , Ed Ott

Nested dichotomies are used as a method of transforming a multiclass classification problem into a series of binary problems. A tree structure is induced that recursively splits the set of classes into subsets, and a binary classification…

机器学习 · 计算机科学 2018-10-04 Tim Leathart , Eibe Frank , Bernhard Pfahringer , Geoffrey Holmes

Monotone Boolean functions, and the monotone Boolean circuits that compute them, have been intensively studied in complexity theory. In this paper we study the structure of Boolean functions in terms of the minimum number of negations in…

计算复杂性 · 计算机科学 2014-10-31 Eric Blais , Clément L. Canonne , Igor C. Oliveira , Rocco A. Servedio , Li-Yang Tan