相关论文: A crystal base for the genetic code
A nucleotides sequence is identified, in the two (four) letters alphabet, by the the labels of a vector state of an irreducible representation of U_q(sl(2)) (U_q(sl(2) + sl(2))), in the limit q -> 0. A master equation for the distribution…
In this paper, we develop the crystal basis theory for quantum generalized Kac-Moody algebras. For a quantum generalized Kac-Moody algebra $U_q(\mathfrak g)$, we first introduce the category $\mathcal O_{int}$ of $U_q(\mathfrak g)$-modules…
Degeneracy is a salient feature of genetic codes, because there are more codons than amino acids. The conventional table for genetic codes suffers from an inability of illustrating a symmetrical nature among genetic base codes. In fact,…
Applications of algebras in physics are related to the connection of measurable observables to relevant elements of the algebras, usually the generators. However, in the determination of the generators in Lie algebras there is place for…
With the couplings between the eight gluons constrained by the structure constants of the su(3) algebra in QCD, one would expect that there should exist a special basis (or set of bases) for the algebra wherein, unlike in a Cartan-Weyl…
We construct a crystal base of $U_q(\mathfrak{gl}(m|n))^-$, the negative half of the quantum superalgebra $U_q(\mathfrak{gl}(m|n))$. We give a combinatorial description of the associated crystal $\mathscr{B}_{m|n}(\infty)$, which is equal…
A representation of the genetic code as a six-dimensional Boolean hypercube is described. This structure is the result of the hierarchical order of the interaction energies of the bases in codon-anticodon recognition. In this paper it is…
Imposing a minimum principle in the framework of the so called crystal basis model of the genetic code, we determine the structure of the minimum set of 22 anticodons which allows the translational-transcription for animal mitochondrial…
This article introduces a novel binary representation of the canonical genetic code based on both the structural similarities of the nucleotides, as well as the physicochemical properties of the encoded amino acids. Each of the four mRNA…
Quantum algebras U_q(su_n) used as the algebras of flavour symmetry (usually described by SU(n)) to study static properties of hadrons lead to intriguing results. In this contribution we focus on the peculiar properties manifested by…
Evolution consists of distinct stages: cosmological, biological, linguistic. Since biology verges on natural sciences and linguistics, we expect that it shares structures and features from both forms of knowledge. Indeed, in DNA we…
A mathematical algorithm to describe DNA or RNA sequences of $N$ nucleotides by a string of $2N$ integers numbers is presented in the framework of the so called crystal basis model of the genetic code. The description allows to define a not…
Using the crystal basis model of the genetic code, a set of relations between the physical-chemical properties of the amino acids are derived and compared with the experimental data. A prevision for the not yet measured thermodynamical…
We construct a crystal basis for the negative half of the quantum group U associated to the standard super Cartan datum of gl(m|1), which is compatible with known crystals on Kac modules and simple modules. We show that these crystals admit…
Suppose that we have a semisimple, connected, simply connected algebraic group $G$ with corresponding Lie algebra $\mathfrak{g}$. There is a Hopf pairing between the universal enveloping algebra $U(\mathfrak{g})$ and the coordinate ring…
The present work is devoted to describe a set of rules explaining the discriminating versus non-discriminating behavior of the di-basic stages and to characterize the role of each base in determining such a behavior. Bases are analyze as…
DNA has been proposed as a chemical platform for computing and data storage, paving the way for building DNA-based computers. Recently, DNA has been hypothesized as an ideal quantum computer with the base pairs working as Josephson…
A three-dimensional model of the genetic vocabulary is proposed in terms of determinative degree, an introduced characteristic of nucleotide, which reflects absolute difference between purin and pyrimidin bases in one DNA strand. In the…
We introduce the simple parametrization for the space of codons (triples of nucleotides) by 8\times 8 table. This table (which we call the dyadic plane) possesses the natural 2-adic ultrametric. We show that after this parametrization the…
This work aims at showing the relevance and the applications possibilities of the Fibonacci sequence, and also its q-deformed or quantum extension, in the study of the genetic code(s). First, after the presentation of a new formula, an…