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Soluble alpha-amylases play an important role in the catabolism of polysaccharides. In this work, we show that the enzyme can interact with the lipid membrane and further alter its mechanical properties. Vesicle fluctuation spectroscopy is…

In this work, we review previously developed coarse-grained (CG) particle models for biological membrane and red blood cells (RBCs) and discuss the advantages of the CG particle method over the continuum and atomic simulations on modeling…

软凝聚态物质 · 物理学 2017-07-18 He Li , Hung-yu Chang , Jun Yang , Lu Lu , George Lykotrafitis

The submicron- and micron-scale structures of composite hydrogels based on bacterial cellulose (BC) and polyacrylamide were studied by spin-echo small-angle neutron scattering (SESANS). These hydrogels were synthesized via free-radical…

Viscosity is a key property of cell membranes that controls mobility of embedded proteins and membrane remodeling. Measuring it is challenging because existing approaches involve complex experimental designs and/or models, and the…

软凝聚态物质 · 物理学 2023-07-19 Hammad A. Faizi , Rumiana Dimova , Petia M. Vlahovska

We use X-ray imaging to study viscous resuspension. In a Taylor-Couette geometry, we shear an initially settled layer of spherical glass particles immersed in a Newtonian fluid and measure the local volume fraction profiles. In this…

软凝聚态物质 · 物理学 2019-12-19 Brice Saint-Michel , Sébastien Manneville , Steven Meeker , Guillaume Ovarlez , Hugues Bodiguel

The stabilization of macromolecules is fundamental to developing biological formulations, such as vaccines and protein therapeutics. In this study, we employ coarse grained polymer models to investigate the impact of four sugars:…

软凝聚态物质 · 物理学 2025-11-26 Praveen Muralikrishnan , Jonathan W. P. Zajac , Caryn L. Heldt , Sarah L. Perry , Sapna Sarupria

Hydrophobically modified magnetic nanoparticles (MNPs) were encapsulated within the membrane of poly(trimethylene carbonate)-b-poly(L-glutamic acid) (PTMC-b-PGA) block copolymer vesicles using a nanoprecipitation process. This formulation…

The determination of potentials of mean force for solute insertion in a membrane by means of all-atom molecular dynamics simulations is often hampered by sampling issues. A multiscale approach to conformational sampling was recently…

化学物理 · 物理学 2017-10-09 Roberto Menichetti , Kurt Kremer , Tristan Bereau

Many low-density nanoparticles show a radial inner structure. This work proposes a novel approach to contrast variation with SAXS based on the constitution of a solvent density gradient in a glass capillary in order to resolve this internal…

软凝聚态物质 · 物理学 2014-10-28 Raul Garcia-Diez , Christian Gollwitzer , Michael Krumrey

We study theoretically the spatiotemporal response of a lipid membrane submitted to a local chemical change of its environment, taking into account the time-dependent profile of the reagent concentration due to diffusion in the solution…

软凝聚态物质 · 物理学 2013-02-06 Anne-Florence Bitbol , Jean-Baptiste Fournier

We investigate the sampling and dipole convergence properties of flux-limited samples of mock X-ray clusters in relation to their underlying ``parent'' cluster distribution. To this purpose, we resort to numerical simulations of the cluster…

天体物理学 · 物理学 2009-10-30 V. Kolokotronis , M. Plionis , P. Coles , S. Borgani

We consider the lateral diffusion of a protein interacting with the curvature of the membrane. The interaction energy is minimized if the particle is at a membrane position with a certain curvature that agrees with the spontaneous curvature…

软凝聚态物质 · 物理学 2008-12-10 Stefan M. Leitenberger , Ellen Reister-Gottfried , Udo Seifert

Resolution smearing is a critical challenge in the quantitative analysis of two-dimensional small-angle neutron scattering (SANS) data, particularly in studies of soft matter flow and deformation using SANS. We present the central moment…

The collision dynamics of hard spheres and cylindrical pores is solved exactly, which is the minimal model for a regularly porous membrane. Nonequilibrium event-driven molecular dynamics simulations are used to show that the permeability…

软凝聚态物质 · 物理学 2021-04-23 Yue Yu , Kai Zhang

A rigorous homogenization theory is derived to describe the effective admittivity of cell suspensions. A new formula is reported for dilute cases that gives the frequency-dependent effective admittivity with respect to the membrane…

偏微分方程分析 · 数学 2013-10-07 Habib Ammari , Josselin Garnier , Laure Giovangigli , Wenjia Jing , Jin-Keun Seo

Large-scale molecular dynamics simulations are used to simulate a layer of nanoparticles diffusing on the surface of a liquid. Both a low viscosity liquid, represented by Lennard-Jones monomers, and a high viscosity liquid, represented by…

软凝聚态物质 · 物理学 2013-01-10 Shengfeng Cheng , Gary S. Grest

In this paper we present a mathematical study of particle diffusion inside and outside a spherical biological cell that has been exposed on one side to a propagating planar diffusive front. The media inside and outside the spherical cell…

生物物理 · 物理学 2024-06-11 Sandeep Santhosh Kumar , Stanley J. Miklavcic

New model of separated form factors is proposed for the evaluation of small-angle neutron scattering curves from large unilamellar vesicles. The validity of the model was checked by comparison to the model of hollow sphere. The model of…

生物物理 · 物理学 2009-11-07 M. A. Kiselev , P. Lesieur , A. M. Kisselev , D. Lombardo , V. L. Aksenov

Molecular dynamics methods have proven their applicability for the reproduction and prediction of molecular conformations during the last decades. However, most of works considered dilute solutions and relatively short trajectories that…

软凝聚态物质 · 物理学 2025-09-23 Vladimir Deshchenya , Kirill Gerke , Nikolay Kondratyuk

The shear-induced deformation of a capsule with a stiff nucleus, a model of eukaryotic cells, is studied numerically. The membrane of the cell and of its nucleus are modelled as a thin and impermeable elastic material obeying a Neo-Hookean…

流体动力学 · 物理学 2017-05-29 Arash Alizad Banaei , Jean-Christophe Loiseau , Iman Lashgari , Luca Brandt