相关论文: Quantum Field Theory and Phylogenetic Branching
In this work we develop, through a governing field, genus theory for a number field $\K$ with tame ramification in $T$ and splitting in $S$, where $T$ and $S$ are finite disjoint sets of primes of $\K$. This approach extends that initiated…
This thesis is a compilation of research in relativistic quantum information theory, and research in quantum reference frames. The research in the former category provides a fundamental construction of quantum information theory of…
We quantize the Helmholtz equation (plus perturbative interactions) in two dimensions to illustrate a manifestly local description of quantum field theory. Using the general boundary formulation we describe the quantum dynamics both in a…
Sampling from high-dimensional and structured probability distributions is a fundamental challenge in computational physics, particularly in the context of lattice field theory (LFT), where generating field configurations efficiently is…
Using a newly introduced connection between the local and non-local description of open quantum system dynamics, we investigate the relationship between these two characterisations in the case of quantum semi-Markov processes. This class of…
We introduce a Markov model for the evolution of a gene family along a phylogeny. The model includes parameters for the rates of horizontal gene transfer, gene duplication, and gene loss, in addition to branch lengths in the phylogeny. The…
Starting from a general relativistic kinetic equation, a self-consistent mean-field equation for fermions is derived within a covariant density matrix approach of QED plasmas in strong external fields. A Schr\"odinger picture formulation on…
Nested (or reconciled) phylogenetic trees model co-evolutionary systems in which one evolutionary history is embedded within another. We introduce a geometric framework for such systems by defining $\sigma$-space, a moduli space of fully…
The perturbative dynamics of quantum field theories is described by a recursive expansion similar to the well known loop expansion. The equivalent formulation based on low-energy dynamics via an expansion in derivatives is well known in the…
The maximum parsimony phylogenetic tree reconstruction problem is NP-hard, presenting a computational bottleneck for classical computing and motivating the exploration of emerging paradigms like quantum computing. To this end, we design…
We study the time evolution of quantum entanglement for a specific class of quantum dynamics, namely the locally scrambled quantum dynamics, where each step of the unitary evolution is drawn from a random ensemble that is invariant under…
The Landau--Lifshitz--Gilbert equations for the evolution of the magnetization, in presence of an external torque, can be cast in the form of the Lorenz equations and, thus, can describe chaotic fluctuations. To study quantum effects, we…
Phylogenetic networks provide a means of describing the evolutionary history of sets of species believed to have undergone hybridization or gene flow during their evolution. The mutation process for a set of such species can be modeled as a…
A generalized set of Clifford cellular automata, which includes all Clifford cellular automata, result from the quantization of a lattice system where on each site of the lattice one has a $2k$-dimensional torus phase space. The dynamics is…
We present the first sub-quadratic time algorithm that with high probability correctly reconstructs phylogenetic trees for short sequences generated by a Markov model of evolution. Due to rapid expansion in sequence databases, such very…
The rates-across-sites assumption in phylogenetic inference posits that the rate matrix governing the Markovian evolution of a character on an edge of the putative phylogenetic tree is the product of a character-specific scale factor and a…
We develop a non-relativistic quantum field theory of electrons and nuclei based on the Coulomb Hamiltonian. We derive the exact equations of motion and write these equations in the form of Hedin's equations for all species of identical…
This paper describes perturbative framework, on the basis of closed-time-path formalism, for studying quasiuniform relativistic quantum field systems near equilibrium and nonequilibrium quasistationary systems. At the first part, starting…
The dynamics of dislocations can be formulated in terms of the evolution of continuous variables representing dislocation densities ('continuum dislocation dynamics'). We show for various variants of this approach that the resulting models…
We study the influence of conservation laws on entanglement growth. Focusing on systems with U(1) symmetry, i.e., conservation of charge or magnetization, that exhibits diffusive dynamics, we theoretically predict the growth of…