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It has been shown that a random-effects framework can be used to test the association between a gene's expression level and the number of DNA copies of a set of genes. This gene-set modelling framework was later applied to find associations…

统计方法学 · 统计学 2015-10-09 Renée Menezes , Leila Mohammadi , Jelle Goeman , Judith Boer

Over the last decades, impressive progresses have been made in many experimental domains, e.g. microscopic techniques such as single-particle tracking, leading to plethoric amounts of data. In a large variety of systems, from natural to…

统计力学 · 物理学 2022-06-03 Xavier Durang , Hyerim Ahn , Jae Youn Shim , Hye Yoon Park , Jae-Hyung Jeon

The empirical studies of city-size distribution show that Zipf's law and the hierarchical scaling law are linked in many ways. The rank-size scaling and hierarchical scaling seem to be two different sides of the same coin, but their…

物理与社会 · 物理学 2018-12-21 Yanguang Chen

Zipf's law in the field of linguistics is tested in the nuclear disassembly within the framework of isospin dependent lattice gas model. It is found that the average cluster charge (or mass) of rank $n$ in the charge (or mass) list shows…

核理论 · 物理学 2007-05-23 Y. G. Ma

The prediction plays the important role in detecting efficient protection and therapy of cancer. The prediction of mutations in gene needs a diagnostic and classification, which is based on the whole database (big dataset), to reach…

机器学习 · 计算机科学 2016-08-10 Ayad Ghany Ismaeel , Dina Yousif Mikhail

Zipf's law of city-size distributions can be expressed by three types of mathematical models: one-parameter form, two-parameter form, and three-parameter form. The one-parameter and one of the two-parameter models are familiar to urban…

物理与社会 · 物理学 2018-12-19 Yanguang Chen

We statistically investigate the distribution of share price and the distributions of three common financial indicators using data from approximately 8,000 companies publicly listed worldwide for the period 2004-2013. We find that the…

经济学 · 定量金融 2017-02-02 Taisei Kaizoji , Michiko Miyano

The topology of gene expression space for a set of 12 cancer types is studied by means of an entropy-like magnitude, which allows the characterization of the regions occupied by tumor and normal samples. The comparison indicates that the…

组织与器官 · 定量生物学 2022-05-19 Augusto Gonzalez , Frank Quintela , Dario A. Leon , Maria Luisa Bringas Vega , Pedro Valdes Sosa

Zipf's law for cities is probably the most famous regularity in social sciences. So much that, a hundred years of publication later, its status is not clear: is it a law of social organisation? Is it an instrument of description of city…

物理与社会 · 物理学 2017-10-10 Clementine Cottineau

In tabular biomedical data analysis, tuning models to high accuracy is considered a prerequisite for discussing feature importance, as medical practitioners expect the validity of feature importance to correlate with performance. In this…

机器学习 · 统计学 2025-10-20 Youngro Lee , Giacomo Baruzzo , Jeonghwan Kim , Jongmo Seo , Barbara Di Camillo

In tumoral cells, gene regulation mechanisms are severely altered, and these modifications in the regulations may be characteristic of different subtypes of cancer. However, these alterations do not necessarily induce differential…

Late diagnosis and high costs are key factors that negatively impact the care of cancer patients worldwide. Although the availability of biological markers for the diagnosis of cancer type is increasing, costs and reliability of tests…

机器学习 · 计算机科学 2019-08-20 Sterling Ramroach , Melford John , Ajay Joshi

We present a novel coupled two-way clustering approach to gene microarray data analysis. The main idea is to identify subsets of the genes and samples, such that when one of these is used to cluster the other, stable and significant…

生物物理 · 物理学 2009-11-06 G. Getz , E. Levine , E. Domany

In histopathology, human experts primarily rely on color as a means of enhancing contrast to interpret tissue morphology, whereas machine vision models process color as raw statistical information. This distinction raises a fundamental…

计算机视觉与模式识别 · 计算机科学 2026-05-19 Farnaz Kheiri , Shahryar Rahnamayan , Masoud Makrehchi

We consider a simple model of firm/city/etc. growth based on a multi-item criterion: whenever entity B fares better that entity A on a subset of $M$ items out of $K$, the agent originally in A moves to B. We solve the model analytically in…

统计力学 · 物理学 2018-04-11 José Moran , Jean-Philippe Bouchaud

For taxonomic levels higher than species, the abundance distributions of number of subtaxa per taxon tend to approximate power laws, but often show strong deviationns from such a law. Previously, these deviations were attributed to…

生物物理 · 物理学 2009-11-06 Johan Chu , Chris Adami

Data of proportional elections show a striking feature: If the parties are ranked according to the number of their voters, the number of votes grows exponentially with the rank of the party. This so-called Zipf's law has been reported…

物理与社会 · 物理学 2018-03-30 Volker Hösel , Johannes Müller , Aurélien Tellier

Understanding the molecular processes that drive cellular life is a fundamental question in biological research. Ambitious programs have gathered a number of molecular datasets on large populations. To decipher the complex cellular…

基因组学 · 定量生物学 2023-03-22 Myriam Bontonou , Anaïs Haget , Maria Boulougouri , Jean-Michel Arbona , Benjamin Audit , Pierre Borgnat

In microarray experiments, it is often of interest to identify genes which have a pre-specified gene expression profile with respect to time. Methods available in the literature are, however, typically not stringent enough in identifying…

应用统计 · 统计学 2009-01-18 J. Tuke , G. F. V. Glonek , P. J. Solomon

Informed selection of drug candidates for laboratory experimentation provides an efficient means of identifying suitable anti-cancer treatments. The advancement of artificial intelligence has led to the development of computational models…