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A practical introduction to stochastic modelling of reaction-diffusion processes is presented. No prior knowledge of stochastic simulations is assumed. The methods are explained using illustrative examples. The article starts with the…

亚细胞过程 · 定量生物学 2007-11-19 Radek Erban , Jonathan Chapman , Philip Maini

Density-dependent diffusion is a widespread phenomenon in nature. We have examined the density-dependent diffusion behavior of some biological processes such as tumor growth and invasion [23]. Here, we extend our previous work by developing…

统计力学 · 物理学 2022-02-14 Ahmed M. Fouad , Marwa M. Fouad

Diffusion models have had a profound impact on many application areas, including those where data are intrinsically infinite-dimensional, such as images or time series. The standard approach is first to discretize and then to apply…

机器学习 · 统计学 2025-06-09 Jakiw Pidstrigach , Youssef Marzouk , Sebastian Reich , Sven Wang

The viscously dominated, low Reynolds' number dynamics of multi-phase, compacting media can lead to nonlinear, dissipationless/dispersive behavior when viewed appropriately. In these systems, nonlinear self-steepening competes with wave…

斑图形成与孤子 · 物理学 2014-01-31 Nicholas K. Lowman , Mark A. Hoefer

The smoothing distribution is the conditional distribution of the diffusion process in the space of trajectories given noisy observations made continuously in time. It is generally difficult to sample from this distribution. We use the…

概率论 · 数学 2025-03-07 Oskar Eklund , Annika Lang , Moritz Schauer

Coarse-grained models that preserve hydrodynamics provide a natural approach to study collective properties of soft-matter systems. Here, we demonstrate that commonly used integration schemes in dissipative particle dynamics give rise to…

软凝聚态物质 · 物理学 2009-10-31 Gerhard Besold , Ilpo Vattulainen , Mikko Karttunen , James M. Polson

A new method is presented for mesoscopic simulations of particle dispersions in nematic liquid crystal solvents. It allows efficient first-principle simulations of the dispersions involving many particles with many-body interactions…

软凝聚态物质 · 物理学 2009-11-07 Ryoichi Yamamoto

In molecular dynamics simulations in the NPT ensemble at constant pressure, the size and shape of the periodic simulation box fluctuate with time. For particle images far from the origin, the rescaling of the box by the barostat results in…

We explain how to use diffusion models to learn inverse renormalization group flows of statistical and quantum field theories. Diffusion models are a class of machine learning models which have been used to generate samples from complex…

高能物理 - 理论 · 物理学 2023-09-07 Jordan Cotler , Semon Rezchikov

A fully discrete finite element method, based on a new weak formulation and a new time-stepping scheme, is proposed for the surface diffusion flow of closed curves in the two-dimensional plane. It is proved that the proposed method can…

数值分析 · 数学 2021-07-28 Wei Jiang , Buyang Li

It is known that diffusion provokes substantial changes in continuous absorbing phase transitions. Conversely, its effect on discontinuous transitions is much less understood. In order to shed light in this direction, we study the inclusion…

统计力学 · 物理学 2014-09-25 Carlos E. Fiore , Gabriel T. Landi

We discuss the diffusion phenomenon in the parabolic and hyperbolic regimes. New effects related to the finite velocity of the diffusion process are predicted, that can partially explain the strange behavior associated to adsorption…

数学物理 · 物理学 2014-02-13 A. Sapora , M. Codegone , G. Barbero

This paper deals with the case of using nonlinear diffusion filters to obtain piecewise constant images as a previous process for segmentation techniques. We first show an intrinsic formulation for the nonlinear diffusion equation to…

计算机视觉与模式识别 · 计算机科学 2026-04-24 Javier Sanguino , Carlos Platero , Olga Velasco

Controlled one-dimensional diffusion processes, with infinitesimal variance (instead of the infinitesimal mean) depending on the control variable, are considered in an interval located on the positive half-line. The process is controlled…

概率论 · 数学 2007-05-23 Mario Lefebvre

The diffusion of a pulse of small grains in an horizontal rotating drum is studied through discrete elements methods simulations. We present a theoretical analysis of the diffusion process in a one-dimensional confined space in order to…

其他凝聚态物理 · 物理学 2007-05-23 Nicolas Taberlet , Patrick Richard

We study the Brownian motion of a classical particle in one-dimensional inhomogeneous environments where the transition probabilities follow quasiperiodic or aperiodic distributions. Exploiting an exact correspondence with the…

统计力学 · 物理学 2009-10-31 F. Igloi , L. Turban , H. Rieger

We consider the diffusion of independent particles experiencing random accelerations by a space- and time-dependent force as well as viscous damping. This model can exhibit several asymptotic behaviours, depending upon the limiting cases…

混沌动力学 · 物理学 2012-06-13 B. Mehlig , M. Wilkinson , V. Bezuglyy , K. Gustavsson , K. Nakamura

Diffusions are a fundamental class of models in many fields, including finance, engineering, and biology. Simulating diffusions is challenging as their sample paths are infinite-dimensional and their transition functions are typically…

统计方法学 · 统计学 2021-06-11 Paul A. Jenkins , Murray Pollock , Gareth O. Roberts , Michael Sørensen

This study introduces a novel point-wise diffusion model that processes spatio-temporal points independently to efficiently predict complex physical systems with shape variations. This methodological contribution lies in applying forward…

计算物理 · 物理学 2025-08-05 Jiyong Kim , Sunwoong Yang , Namwoo Kang

In this paper, we study porous media flows in heterogeneous stochastic media. We propose an efficient forward simulation technique that is tailored for variational Bayesian inversion. As a starting point, the proposed forward simulation…

应用统计 · 统计学 2018-02-12 Keren Yang , Nilabja Guha , Yalchin Efendiev , Bani K. Mallick