相关论文: Edit Distance between Unlabeled Ordered Trees

We study the problem of approximating the edit distance of two strings in sublinear time, in a setting where one or both string(s) are preprocessed, as initiated by Goldenberg, Rubinstein, Saha (STOC '20). Specifically, in the $(k, K)$-gap…

The edit distance is a metric of dissimilarity between strings, widely applied in computational biology, speech recognition, and machine learning. Let $e_k(n)$ denote the average edit distance between random, independent strings of $n$…

We study the local limit of the fixed-point forest, a tree structure associated to a simple sorting algorithm on permutations. This local limit can be viewed as an infinite random tree that can be constructed from a Poisson point process…

The quartet distance is a measure of similarity used to compare two unrooted phylogenetic trees on the same set of $n$ leaves, defined as the number of subsets of four leaves related by a different topology in both trees. After a series of…

We consider the well-studied problem of finding a spanning tree with minimum average distance between vertex pairs (called a MAD tree). This is a classic network design problem which is known to be NP-hard. While approximation algorithms…

In a previous work, B\'ona and Pantone studied permutations that avoided all but one pattern of length $k$ that began with a length $k-1$ increasing subsequence. We draw the connection between that idea and distant patterns, first discussed…

Solving the first nonmonotonic, longer-than-three instance of a classic enumeration problem, we obtain the generating function $H(x)$ of all 1342-avoiding permutations of length $n$ as well as an {\em exact} formula for their number…

It is known that the size of the largest common subtree (i.e., the maximum agreement subtree) of two independent random binary trees with $n$ given labeled leaves is of order between $n^{0.366}$ and $n^{1/2}$. We improve the lower bound to…

Sorting by reversals is an important problem in inferring the evolutionary relationship between two genomes. The problem of sorting unsigned permutation has been proven to be NP-hard. The best guaranteed error bounded is the 3/2-…

In this paper, we compute the distribution of the first letter statistic on nine avoidance classes of permutations corresponding to two pairs of patterns of length four. In particular, we show that the distribution is the same for each…

The path-difference metric is one of the oldest distances for the comparison of fully resolved phylogenetic trees, but its statistical properties are still quite unknown. In this paper we compute the mean value of the square of the…

Geometric graphs appear in many real-world data sets, such as road networks, sensor networks, and molecules. We investigate the notion of distance between embedded graphs and present a metric to measure the distance between two geometric…

The Ulam distance of two permutations on $[n]$ is $n$ minus the length of their longest common subsequence. In this paper, we show that for every $\varepsilon>0$, there exists some $\alpha>0$, and an infinite set $\Gamma\subseteq…

The edit distance is a way of quantifying how similar two strings are to one another by counting the minimum number of character insertions, deletions, and substitutions required to transform one string into the other. A simple dynamic…

Let $T$ be an $n$-node tree of maximum degree 4, and let $P$ be a set of $n$ points in the plane with no two points on the same horizontal or vertical line. It is an open question whether $T$ always has a planar drawing on $P$ such that…

We describe a kernel of size 9k-8 for the NP-hard problem of computing the Tree Bisection and Reconnect (TBR) distance k between two unrooted binary phylogenetic trees. We achieve this by extending the existing portfolio of reduction rules…

Sorting and ranking supervision is a method for training neural networks end-to-end based on ordering constraints. That is, the ground truth order of sets of samples is known, while their absolute values remain unsupervised. For that, we…

A bijection between ternary trees with $n$ nodes and a subclass of Motzkin paths of length $3n$ is given. This bijection can then be generalized to $t$-ary trees.

We present a deterministic comparison-based algorithm that sorts sequences avoiding a fixed permutation $\pi$ in linear time, even if $\pi$ is a priori unkown. Moreover, the dependence of the multiplicative constant on the pattern $\pi$…

In Pattern Matching with Weighted Edits (PMWED), we are given a pattern $P$ of length $m$, a text $T$ of length $n$, a positive threshold $k$, and oracle access to a weight function that specifies the costs of edits (depending on the…