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Deciding whether there is a single tree -a supertree- that summarizes the evolutionary information in a collection of unrooted trees is a fundamental problem in phylogenetics. We consider two versions of this question: agreement and…

离散数学 · 计算机科学 2013-08-02 Sudheer Vakati , David Fernández-Baca

This paper will show when a rooted path tree of a finite directed rooted graph has only finitely many orbits under the action of its undirected automorphism group (i.e. when it is cocompact). This will allow us to specify which trees are…

组合数学 · 数学 2025-09-30 Roman Gorazd

We study three problems introduced by Bang-Jensen and Yeo [Theor. Comput. Sci. 2015] and by Bang-Jensen, Havet, and Yeo [Discret. Appl. Math. 2016] about finding disjoint "balanced" spanning rooted substructures in graphs and digraphs,…

数据结构与算法 · 计算机科学 2021-05-05 Stéphane Bessy , Florian Hörsch , Ana Karolinna Maia , Dieter Rautenbach , Ignasi Sau

In this paper, we introduce two families of planar and self-similar graphs which have small-world properties. The constructed models are based on an iterative process where each step of a certain formulation of modules results in a final…

组合数学 · 数学 2024-04-19 Muhammed Alaa Morsy , Mohamed Anwar , Abdallah Aboutahoun

An oriented graph is a directed graph without directed 2-cycles. Poljak and Turz\'{i}k (1986) proved that every connected oriented graph $G$ on $n$ vertices and $m$ arcs contains an acyclic subgraph with at least $\frac{m}{2}+\frac{n-1}{4}$…

数据结构与算法 · 计算机科学 2012-10-01 Robert Crowston , Gregory Gutin , Mark Jones

The Directed Rural Postman Problem (DRPP) can be formulated as follows: given a strongly connected directed multigraph $D=(V,A)$ with nonnegative integral weights on the arcs, a subset $R$ of $A$ and a nonnegative integer $\ell$, decide…

数据结构与算法 · 计算机科学 2014-04-01 Gregory Gutin , Magnus Wahlstrom , Anders Yeo

Given a connected undirected graph $G$, a spanning tree is a subgraph $T$ of $G$ such that $V(T) = V(G)$ and $T$ is a tree. A collection of $\ell$ spanning trees $T_1,\ldots,T_\ell$ is pairwise $k$-diverse if for every $i \neq j$, $|E(T_i)…

数据结构与算法 · 计算机科学 2026-04-28 Petr A. Golovach , Diptapriyo Majumdar , Saket Saurabh

The leafage of a digraph is the minimum number of leaves in a host tree in which it has a subtree intersection representation. We discuss bounds on the leafage in terms of other parameters (including Ferrers dimension), obtaining a string…

组合数学 · 数学 2007-05-23 In-Jen Lin , Malay K. Sen , Douglas B. West

A classical result of Koml\'os, S\'ark\"ozy and Szemer\'edi shows that every large $n$-vertex graph with minimum degree at least $(1/2+\gamma)n$ contains all spanning trees of bounded degree. We generalised this result to loose spanning…

组合数学 · 数学 2025-02-10 Yaobin Chen , Allan Lo

In 2009, Kyaw proved that every $n$-vertex connected $K_{1,4}$-free graph $G$ with $\sigma_4(G)\geq n-1$ contains a spanning tree with at most $3$ leaves. In this paper, we prove an analogue of Kyaw's result for connected $K_{1,5}$-free…

组合数学 · 数学 2018-10-22 Yuan Chen , Pham Hoang Ha , Dang Dinh Hanh

A rooted tree $\vec{R}$ is a rooted subtree of a tree $T$ if the tree obtained by replacing the directed edges of $\vec{R}$ by undirected edges is a subtree of $T$. We study the problem of assigning minimum number of colors to a given set…

数据结构与算法 · 计算机科学 2018-05-22 Anuj Rawat

We show that if $D$ is an $n$-vertex digraph with more than $(k-1)n$ arcs that does not contain any of three forbidden digraphs, then $D$ contains every antidirected tree on $k$ arcs. The forbidden digraphs are those orientations of $K_{2,…

组合数学 · 数学 2024-10-17 Maya Stein , Ana Trujillo-Negrete

Construction of phylogenetic trees and networks for extant species from their characters represents one of the key problems in phylogenomics. While solution to this problem is not always uniquely defined and there exist multiple methods for…

种群与进化 · 定量生物学 2016-08-10 Nikita Alexeev , Max A. Alekseyev

The Minimum Branch Vertices Spanning Tree problem aims to find a spanning tree $T$ in a given graph $G$ with the fewest branch vertices, defined as vertices with a degree three or more in $T$. This problem, known to be NP-hard, has…

数据结构与算法 · 计算机科学 2025-07-16 Luisa Gargano , Adele A. Rescigno

We investigate exact crossing minimization for graphs that differ from trees by a small number of additional edges, for several variants of the crossing minimization problem. In particular, we provide fixed parameter tractable algorithms…

计算几何 · 计算机科学 2013-09-02 Michael J. Bannister , David Eppstein , Joseph A. Simons

A spanning tree $T$ of a connected graph $G$ is a subgraph of $G$ that is a tree covers all vertices of $G$. The leaf distance of $T$ is defined as the minimum of distances between any two leaves of $T$. A fractional matching of a graph $G$…

组合数学 · 数学 2025-07-16 Sizhong Zhou

Tanglegrams are formed by taking two rooted binary trees $T$ and $S$ with the same number of leaves and uniquely matching each leaf in $T$ with a leaf in $S$. They are usually represented using layouts, which embed the trees and the…

组合数学 · 数学 2022-06-14 Kevin Liu

Edmonds' fundamental theorem on arborescences characterizes the existence of $k$ pairwise arc-disjoint spanning arborescences with prescribed root sets in a digraph. In this paper, we study the problem of packing branchings in digraphs…

组合数学 · 数学 2022-01-27 Hui Gao , Daqing Yang

For all integers $k\geq 3$, we give an $O(n^4)$ time algorithm for the problem whose instance is a graph $G$ of girth at least $k$ together with $k$ vertices and whose question is "Does $G$ contains an induced subgraph containing the $k$…

离散数学 · 计算机科学 2013-09-06 Wei Liu , Nicolas Trotignon

There has been intensive work on the parameterized complexity of the typically NP-hard task to edit undirected graphs into graphs fulfilling certain given vertex degree constraints. In this work, we lift the investigations to the case of…