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The some dynamic properties of a random heteropolymer in the condensed state are studied in the mode coupling approximation. In agreement with recent report a dynamic friction increasing is predicted for the random heteropolymer with…

无序系统与神经网络 · 物理学 2007-05-23 E. Sh. Mamasakhlisov , V. F. Morozov

We consider polymers in which M randomly selected pairs of monomers are restricted to be in contact. Analytical arguments and numerical simulations show that an ideal (Gaussian) chain of N monomers remains expanded as long as M<<N. This…

凝聚态物理 · 物理学 2009-10-28 Yacov Kantor , Mehran Kardar

We have analyzed the dependence of average ground state energy per monomer, $e$, of the complex of two random heteropolymers with quenched sequences, on chain length, $n$, in the ensemble of chains with uniform distribution of primary…

统计力学 · 物理学 2009-11-13 M. V. Tamm , S. K. Nechaev

Random heteropolymers do not display the typical equilibrium properties of globular proteins, but are the starting point to understand the physics of proteins and, in particular, to describe their non-native states. So far, they have been…

生物大分子 · 定量生物学 2015-06-03 Guido Tiana , Ludovico Sutto

We present a novel and rigorous approach to the Langevin dynamics of ideal polymer chains subject to internal distance constraints. The permanent constraints are modelled by harmonic potentials in the limit when the strength of the…

软凝聚态物质 · 物理学 2009-10-28 M. P. Solf , T. A. Vilgis

Various authors have invoked discretized fractional Brownian (fBm) motion as a model for chain polymers with long range interaction of monomers along the chain. We show that for these, in contrast to the Brownian case, linear forces are…

数学物理 · 物理学 2019-07-24 Wolfgang Bock , Jinky Bornales , Ludwig Streit

We propose a new toy model of a heteropolymer chain capable of forming planar secondary structures typical for RNA molecules. In this model the sequential intervals between neighboring monomers along a chain are considered as quenched…

软凝聚态物质 · 物理学 2014-01-07 S. K. Nechaev , A. N. Sobolevski , O. V. Valba

We have analyzed the equilibrium response of chain molecules to stretching. For a homogeneous sequence of monomers, the induced transition from compact globule to extended coil below the $\theta$-temperature is predicted to be sharp. For…

软凝聚态物质 · 物理学 2009-11-07 Phillip L. Geissler , Eugene I. Shakhnovich

We present a simple analytical theory of flexible polymer chain dissolved in a good solvent, carrying permanent freely oriented dipoles on the monomers. We take into account the dipole correlations within the random phase approximation…

软凝聚态物质 · 物理学 2017-03-17 Yu. A. Budkov , N. N. Kalikin , A. L. Kolesnikov

We study the phase transitions of a random copolymer chain with quenched disorder. We apply a replica variational approach based on a Gaussian trial Hamiltonian in terms of the correlation functions of monomer Fourier coordinates. This…

无序系统与神经网络 · 物理学 2009-10-30 A. Moskalenko , Yu. A. Kuznetsov , K. A. Dawson

We consider polymers in which M randomly selected pairs of monomers are restricted to be in contact. Analytical arguments and numerical simulations show that an ideal (Gaussian) chain of N monomers remains expanded as long as M<<N; its mean…

凝聚态物理 · 物理学 2009-10-28 Yacov Kantor , Mehran Kardar

Polyampholytes (PAs) are heteropolymers with long range Coulomb interactions. Unlike polymers with short range forces, PA energy levels have non-vanishing correlations and are thus very different from the Random Energy Model (REM).…

凝聚态物理 · 物理学 2009-10-28 Vijay S. Pande , Alexander Yu. Grosberg , Chris Joerg , Mehran Kardar , Toyoichi Tanaka

In random heteropolymer globules with short-range interactions between the monomers, freezing takes place at the microscopic length scale only, and can be described by a 1-step replica symmetry breaking. The fact that the long-range Coulomb…

软凝聚态物质 · 物理学 2009-10-31 Hindrik Jan Angerman , Eugene Shakhnovich

We consider force-induced unzipping transition for a heterogeneous DNA model with a long-range correlated base-sequence. It is shown that as compared to the uncorrelated situation, long-range correlations smear the unzipping…

统计力学 · 物理学 2007-05-23 A. E. Allahverdyan , Zh. S. Gevorkian

We present an analytical theory for heteropolymer deformation, as exemplified experimentally by stretching of single protein molecules. Using a mean-field replica theory, we determine phase diagrams for stress-induced unfolding of typical…

统计力学 · 物理学 2009-11-07 Phillip L. Geissler , Eugene I. Shakhnovich

It is commonly accepted that in concentrated solutions or melts high-molecular weight polymers display random-walk conformational properties without long-range correlations between subsequent bonds. This absence of memory means, for…

软凝聚态物质 · 物理学 2009-11-11 J. P. Wittmer , P. Beckrich , F. Crevel , C. C. Huang , A. Cavallo , T. Kreer , H. Meyer

We analyze a (1+1)-dimension directed random walk model of a polymer dipped in a medium constituted by two immiscible solvents separated by a flat interface. The polymer chain is heterogeneous in the sense that a single monomer may…

概率论 · 数学 2007-05-23 Erwin Bolthausen , Giambattista Giacomin

Cross-correlations are usually considered to emerge through interaction between particles. Here we present a mechanism capable to generate power-law cross-correlations between non-interacting particles exposed to an external potential. This…

混沌动力学 · 物理学 2013-03-18 Fotis K. Diakonos , Alexandros K. Karlis , Peter Schmelcher

The phase structure of a homopolymer chain is investigated in terms of a universal theoretical model, designed to describe the infrared limit of slow spatial variations. The effects of chirality are studied and compared with the influence…

软凝聚态物质 · 物理学 2015-12-25 A. Sinelnikova , A. J. Niemi , M. Ulybyshev

We investigate the ground state properties of a family of $N$-body systems in 1-dimension, trapped in a polynomial potential and having long range 2-body interaction in addition to the inverse square potential studied in the…

量子物理 · 物理学 2009-11-10 Saugata Ghosh
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