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Based on a non-equilibrium mechanism for spatial pattern formation we study how position information can be controlled by locally coupled discrete dynamical networks, similar to gene regulation networks of cells in a developing…

分子网络 · 定量生物学 2009-08-26 Thimo Rohlf , Stefan Bornholdt

Self-organization, the ability of a system of microscopically interacting entities to shape macroscopically ordered structures, is ubiquitous in Nature. Spatio-temporal patterns are abundantly observed in a large plethora of applications,…

斑图形成与孤子 · 物理学 2019-06-17 Malbor Asllani , Timoteo Carletti , Duccio Fanelli , Philip K. Maini

According to empirical observations, some pattern formation phenomena in driven many-particle systems are more pronounced in the presence of a certain noise level. We investigate this phenomenon of fluctuation-driven ordering with a…

统计力学 · 物理学 2009-11-07 Dirk Helbing , Tadeusz Platkowski

Based on a recently proposed non-equilibrium mechanism for spatial pattern formation [cond-mat/0312366] we study how morphogenesis can be controlled by locally coupled discrete dynamical networks, similar to gene regulation networks of…

分子网络 · 定量生物学 2007-05-23 Thimo Rohlf , Stefan Bornholdt

Diffusion models generate structure by progressively transforming noise into data, yet the mechanisms underlying this transition remain poorly understood. In this work, we show that pattern formation in trained diffusion models can be…

机器学习 · 计算机科学 2026-04-29 Luca Ambrogioni

Spatial self-organization emerges in distributed systems exhibiting local interactions when nonlinearities and the appropriate propagation of signals are at work. These kinds of phenomena can be modeled with different frameworks, typically…

细胞行为 · 定量生物学 2016-11-23 Adriano Bonforti , Salva Duran-Nebreda , Raul Montañez , Ricard Solé

This paper is concerned with stochastic reaction-diffusion kinetics governed by the reaction-diffusion master equation. Specifically, the primary goal of this paper is to provide a mechanistic basis of Turing pattern formation that is…

定量方法 · 定量生物学 2015-04-23 Yutaka Hori , Shinji Hara

This paper proposes a control theoretic framework to model and analyze the self-organized pattern formation of molecular concentrations in biomolecular communication networks, emerging applications in synthetic biology. In biomolecular…

分子网络 · 定量生物学 2019-01-08 Yutaka Hori , Hiroki Miyazako , Soichiro Kumagai , Shinji Hara

We review the mathematical formalism underlying the modelling of stochasticity in biological systems. Beginning with a description of the system in terms of its basic constituents, we derive the mesoscopic equations governing the dynamics…

种群与进化 · 定量生物学 2012-11-05 Alan J. McKane , Tommaso Biancalani , Tim Rogers

Turing instability in activator-inhibitor systems provides a paradigm of nonequilibrium pattern formation; it has been extensively investigated for biological and chemical processes. Turing pattern formation should furthermore be possible…

适应与自组织系统 · 物理学 2010-05-13 Hiroya Nakao , Alexander S. Mikhailov

The counterintuitive emergence of order from noise is a central phenomenon in science, ranging from pattern formation and synchronization to order-by-disorder in frustrated systems. While large-scale spatial self-organization induced by…

软凝聚态物质 · 物理学 2026-02-02 Satyam Anand , Guanming Zhang , Stefano Martiniani

The diffusion-driven Turing instability is a potential mechanism for spatial pattern formation in numerous biological and chemical systems. However, engineering these patterns and demonstrating that they are produced by this mechanism is…

生物物理 · 物理学 2025-12-02 Antonio Matas-Gil , Robert G. Endres

We consider a system of independent point-like particles performing a Brownian motion while interacting with a Gaussian fluctuating background. These particles are in addition endowed with a discrete two-state internal degree of freedom…

软凝聚态物质 · 物理学 2020-02-12 Ruben Zakine , Jean-Baptiste Fournier , Frédéric van Wijland

Spatial pattern formation in excitable fluctuating media was researched analytically from the point of view of the order parameters concept. The reaction-diffusion system in external noise is considered as a model of such medium. Stochastic…

斑图形成与孤子 · 物理学 2017-03-16 Svetlana E. Kurushina , Valery V. Maximov , Yuri M. Romanovskii

It is proposed that self-organisation (SO) in non-equilibrium systems is governed by a general principle: it emerges when a minute subset of system configurations are exceptionally stable and long-lived to survive the noise generated by the…

统计力学 · 物理学 2026-04-20 Raphael Blumenfeld

The ability of Gaussian noise to induce ordered states in dynamical systems is here presented in an overview of the main stochastic mechanisms able to generate spatial patterns. These mechanisms involve: (i) a deterministic local dynamics…

统计力学 · 物理学 2012-05-14 Stefania Scarsoglio , Francesco Laio , Paolo D'Odorico , Luca Ridolfi

We study the flocking and pattern formations of active particles with a Vicsek-like model that includes a configuration dependent noise term. In particular, we couple the strength of the noise with both the local density and orientation of…

生物物理 · 物理学 2017-02-09 Kosuke Matsui , John J. Molina

Many approaches to modelling reaction-diffusion systems with anomalous transport rely on deterministic equations and ignore fluctuations arising due to finite particle numbers. Starting from an individual-based model we use a…

统计力学 · 物理学 2019-05-29 Joseph W. Baron , Tobias Galla

We have studied the entropy-driven mechanism leading to stationary patterns formation in stochastic systems with local dynamics and non-Fickian diffusion. We have shown that a multiplicative noise fulfilling a fluctuation-dissipation…

统计力学 · 物理学 2008-06-20 D. O. Kharchenko , S. V. Kokhan , A. V. Dvornichenko

Nonlinear instabilities are responsible for spontaneous pattern formation in a vast number of natural and engineered systems ranging from biology to galaxies build-up. We propose a new instability mechanism leading to pattern formation in…

斑图形成与孤子 · 物理学 2016-01-20 A. M. Perego , N. Tarasov , D. V. Churkin , S. K. Turitsyn , K. Staliunas
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