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There is mounting empirical evidence that many communities of living organisms display key features which closely resemble those of physical systems at criticality. We here introduce a minimal model framework for the dynamics of a community…

生物物理 · 物理学 2020-02-17 Fabio Peruzzo , Mauro Mobilia , Sandro Azaele

We address the folding induced by differential growth in soft layered solids via an elementary model that consists of a soft growing neo-Hookean elastic layer adhered to a deep elastic substrate. As the layer/substrate modulus ratio is…

软凝聚态物质 · 物理学 2015-09-30 Tuomas Tallinen , John S. Biggins

We investigate a two-dimensional system of active particles confined to a narrow annular domain. Despite the absence of explicit interactions among the velocities or the active forces of different particles, the system displays a transition…

统计力学 · 物理学 2022-03-15 Lorenzo Caprini , Claudio Maggi , Umberto Marini Bettolo Marconi

Constructing physical models of living cells and tissues is an extremely challenging task because of the high complexities of both intra- and intercellular processes. In addition, the force that a single cell generates vanishes in total due…

软凝聚态物质 · 物理学 2019-05-09 Mitsusuke Tarama , Kenji Mori , Ryoichi Yamamoto

In this paper the spatial-temporal dynamics of the members of interacting populations is described by nonlinear partial differential equations. We consider the migration as a diffusion process influenced by the changing values of the birth…

可精确求解与可积系统 · 物理学 2012-08-28 Ivan jordanov , Nikolay K. Vitanov , Elena Nikolova

The simplest prescription for building a patterned structure from its constituents is to add particles, one at a time, to an appropriate template. However, self-organizing molecular and colloidal systems in nature can evolve in much more…

统计力学 · 物理学 2009-04-07 Stephen Whitelam , Edward H. Feng , Michael F. Hagan , Phillip L. Geissler

In this paper we present an individual-based mechanical model that describes the dynamics of two contiguous cell populations with different proliferative and mechanical characteristics. An off-lattice modelling approach is considered…

偏微分方程分析 · 数学 2020-01-14 Tommaso Lorenzi , Philip J. Murray , Mariya Ptashnyk

Cyclic transitions between active and passive states are central to many natural and synthetic systems, ranging from light-driven active particles to animal migrations. Here, we investigate a minimal model of self-propelled Brownian…

软凝聚态物质 · 物理学 2025-01-28 Ye Zhang , Duanduan Wan

We present a spatial, individual-based predator-prey model in which dispersal is dependent on the local community. We determine species suitability to the biotic conditions of their local environment through a time and space varying fitness…

种群与进化 · 定量生物学 2008-07-21 Elise Filotas , Martin Grant , Lael Parrott , Per Arne Rikvold

Navigation of microorganisms is controlled by internal processes ultimately sensitive to mechanical or chemical signaling encountered along the path. In many natural environments, such as porous soils or physiological ducts, motile species…

Collective cell migration in epithelia relies on cell intercalation: a local remodelling of the cellular network that allows neighbouring cells to swap their positions. Unlike foams and passive cellular fluid, in epithelial intercalation…

软凝聚态物质 · 物理学 2025-10-31 Dimitrios Krommydas , Livio Nicola Carenza , Luca Giomi

Elastic properties and internal states of isotropic sphere packings are studied by numerical simulations. Several numerical protocols to assemble dense configurations are compared. One, which imitates experiments with lubricated contacts,…

材料科学 · 物理学 2009-01-16 Ivana Agnolin , Jean-Noël Roux

Self-organization is the generation of order out of local interactions in non-equilibrium [1]. It is deeply connected to all fields of science from physics, chemistry to biology where functional living structures self-assemble[2] and…

软凝聚态物质 · 物理学 2018-10-24 Utsab Khadka , Viktor Holubec , Haw Yang , Frank Cichos

We study a reaction-diffusion model posed on two distinct spatial scales that accounts for diffusion, aggregation, fragmentation, and deposition of populations of colloidal particles within a porous material. In this model, the macroscopic…

偏微分方程分析 · 数学 2026-04-14 Christos Nikolopoulos , Michael Eden , Adrian Muntean

Collective epithelial migration leverages on topological rearrangements of the intercellular junctions, which allow cells to intercalate without loosing confluency. In silico studies have provided a clear indication that this process could…

软凝聚态物质 · 物理学 2025-02-14 Leonardo Puggioni , Dimitrios Krommydas , Luca Giomi

We review the depinning and nonequilibrium phases of collectively interacting particle systems driven over random or periodic substrates. This type of system is relevant to vortices in type-II superconductors, sliding charge density waves,…

超导电性 · 物理学 2017-12-06 C. Reichhardt , C. J. Olson Reichhardt

We consider a random model of diffusion and coagulation. A large number of small particles are randomly scattered at an initial time. Each particle has some integer mass and moves in a Brownian motion whose diffusion rate is determined by…

概率论 · 数学 2012-08-21 Alan Hammond , Fraydoun Rezakhanlou

We study flocking in one dimension, introducing a lattice model in which particles can move either left or right. We find that the model exhibits a continuous nonequilibrium phase transition from a condensed phase, in which a single `flock'…

统计力学 · 物理学 2009-10-31 O. J. O'Loan , M. R. Evans

Spatial coupling has recently emerged as a powerful paradigm to construct graphical models that work well under low-complexity message-passing algorithms. Although much progress has been made on the analysis of spatially coupled models…

信息论 · 计算机科学 2013-10-01 Rafah El-Khatib , Nicolas Macris , Ruediger Urbanke

We construct a continuum model for biological aggregations in which individuals experience long-range social attraction and short range dispersal. For the case of one spatial dimension, we study the steady states analytically and…

种群与进化 · 定量生物学 2007-05-23 Chad M. Topaz , Andrea L. Bertozzi , Mark A. Lewis