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In a mathematical model of interacting biological organisms, where external interventions may alter behavior over time, traditional models that assume fixed parameters usually do not capture the evolving dynamics. In oncology, this is…

机器学习 · 计算机科学 2025-12-18 Kayode Olumoyin , Lamees El Naqa , Katarzyna Rejniak

Physics-informed neural networks (PINNs) are neural networks that embed the laws of dynamical systems modeled by differential equations into their loss function as constraints. In this work, we present a PINN framework applied to oncology.…

机器学习 · 计算机科学 2025-10-16 Kayode Olumoyin , Katarzyna Rejniak

The effectiveness of oncolytic virotherapy is significantly affected by several elements of the tumour microenvironment, which reduce the ability of the virus to infect cancer cells. In this work, we focus on the influence of hypoxia on…

组织与器官 · 定量生物学 2026-03-26 David Morselli , Giulia Chiari , Federico Frascoli , Marcello E. Delitala

Hypoxia-activated prodrugs offer a promising strategy for targeting oxygen-deficient regions in solid tumors, which are often resistant to conventional therapies. However, modeling their behavior is challenging because of the complex…

Compartment models of cell culture are widely used in cytology, pharmacology, toxicology and other fields. Numerical simulation, data modeling and prediction of compartment models can be realized by traditional differential equation…

定量方法 · 定量生物学 2022-06-13 Jiahao Ma

Modeling tumor growth accurately is essential for understanding cancer progression and informing treatment strategies. To estimate the parameters in the tumor growth model described by a nonlinear PDE, we adopt Physics-Informed Neural…

偏微分方程分析 · 数学 2025-11-21 Liu Liu , Yifei Wang , Qinyu Xu , Xiaoqian Xu

We develop and analyze a mathematical model of oncolytic virotherapy in the treatment of melanoma. We begin with a special, local case of the model, in which we consider the dynamics of the tumour cells in the presence of an oncolytic virus…

动力系统 · 数学 2023-09-07 Tedi Ramaj , Xingfu Zou

In the study of therapeutic strategies for the treatment of cancer, eco-evolutionary dynamics are of particular interest, since characteristics of the tumour population, interaction with the environment and effects of the treatment,…

种群与进化 · 定量生物学 2023-07-19 Giulia Chiari , Giada Fiandaca , Marcello Edoardo Delitala

The use of bacteria has been attractive to cancer researchers as drug delivery vehicle because motile bacteria are able to penetrate in tumors. In particular, the combination of therapeutic bacteria and conventional chemotherapy leads to…

组织与器官 · 定量生物学 2020-01-06 Hiroaki Shirai , Kosuke Tsukada

Tumor cell migration within the microenvironment is a crucial aspect for cancer progression and, in this context, hypoxia has a significant role. An inadequate oxygen supply acts as an environmental stressor inducing migratory bias and…

细胞行为 · 定量生物学 2026-02-24 Giulia Chiari , Martina Conte , Marcello Delitala

We present a new experimental-computational technology of inferring network models that predict the response of cells to perturbations and that may be useful in the design of combinatorial therapy against cancer. The experiments are…

In the study of cancer evolution and therapeutic strategies, scientific evidence shows that a key dynamics lies in the tumor-environment interaction. In particular, oxygen concentration plays a central role in the determination of the…

种群与进化 · 定量生物学 2023-07-20 Giulia Chiari , Giada Fiandaca , Marcello Edoardo Delitala

In this work, we focus on the analytical and numerical study of a mathematical model for brain tumors with radiotherapy influence. Under certain assumptions on the given data in the model, we prove existence and uniqueness of a weak…

偏微分方程分析 · 数学 2024-09-27 Marina Chugunova , Hangjie Ji , Roman Taranets , Nataliya Vasylyeva

Physics-informed neural networks (PINNs) provide a powerful framework for learning governing equations of dynamical systems from data. Biologically-informed neural networks (BINNs) are a variant of PINNs that preserve the known differential…

机器学习 · 计算机科学 2026-04-21 William Lavery , Jodie A. Cochrane , Christian Olesen , Dagim S. Tadele , John T. Nardini , Sara Hamis

Brain tumors delay the standard preprocessing workflow for further examination. Brain inpainting offers a viable, although difficult, solution for tumor tissue processing, which is necessary to improve the precision of the diagnosis and…

图像与视频处理 · 电气工程与系统科学 2025-02-25 Tianli Tao , Ziyang Wang , Han Zhang , Theodoros N. Arvanitis , Le Zhang

Systems biology and systems neurophysiology in particular have recently emerged as powerful tools for a number of key applications in the biomedical sciences. Nevertheless, such models are often based on complex combinations of multiscale…

神经与进化计算 · 计算机科学 2022-09-27 Matteo Ferrante , Andera Duggento , Nicola Toschi

The dynamics of tumor-immune interactions within a complex tumor microenvironment are typically modeled using a system of ordinary differential equations or partial differential equations. These models introduce some unknown parameters that…

定量方法 · 定量生物学 2025-10-22 Bishal Chhetri , B. V. Rathish Kumar

Predicting cancer dynamics under treatment is challenging due to high inter-patient heterogeneity, lack of predictive biomarkers, and sparse and noisy longitudinal data. Mathematical models can summarize cancer dynamics by a few…

We investigate a new dynamical system that describes tumor-host interaction. The equation that describes the untreated tumor growth is based on non-extensive statistical mechanics. Recently, this model has been shown to fit successfully…

As the development of new classes of antibiotics slows, bacterial resistance to existing antibiotics is becoming an increasing problem. A potential solution is to develop treatment strategies with an alternative mode of action. We consider…

细胞行为 · 定量生物学 2018-07-04 Paul A. Roberts , Ryan M. Huebinger , Emma Keen , Anne-Marie Krachler , Sara Jabbari
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