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Recently, multi-scale notions of local homology (a variant of persistent homology) have been used to study the local structure of spaces around a given point from a point cloud sample. Current reconstruction guarantees rely on constructing…

计算几何 · 计算机科学 2013-04-24 Primoz Skraba , Bei Wang

Topological complexity is a homotopy invariant that measures the minimal number of continuous rules required for motion planning in a space. In this work, we introduce persistent analogs of topological complexity and its cohomological lower…

代数拓扑 · 数学 2025-08-19 Facundo Mémoli , Ling Zhou

Dimensionality reduction techniques are powerful tools for data preprocessing and visualization which typically come with few guarantees concerning the topological correctness of an embedding. The interleaving distance between the…

机器学习 · 计算机科学 2022-02-01 Bradley J. Nelson , Yuan Luo

The Vietoris-Rips filtration for an $n$-point metric space is a sequence of large simplicial complexes adding a topological structure to the otherwise disconnected space. The persistent homology is a key tool in topological data analysis…

计算几何 · 计算机科学 2017-09-19 Vitaliy Kurlin

A crucial step in the analysis of persistent homology is the transformation of data into an appropriate topological object (in our case, a simplicial complex). Modern packages for persistent homology often construct Vietoris--Rips or other…

计算几何 · 计算机科学 2019-09-18 Michelle Feng , Mason A. Porter

A challenge in computational topology is to deal with large filtered geometric complexes built from point cloud data such as Vietoris-Rips filtrations. This has led to the development of schemes for parallel computation and compression…

代数拓扑 · 数学 2022-05-04 Bradley J. Nelson

Persistent homology studies the evolution of k-dimensional holes along a nested sequence of simplicial complexes (called a filtration). The set of bars (i.e. intervals) representing birth and death times of k-dimensional holes along such…

其他计算机科学 · 计算机科学 2017-01-30 Nieves Atienza , Rocio Gonzalez-Diaz , Matteo Rucco

Computing Persistent Homology for large point clouds remains a bottleneck for the wider adoption of persistent homology by the scientific community. We present an algorithm which can compute the degree-1 Vietoris-Rips Persistent Homology of…

代数拓扑 · 数学 2024-09-13 Musashi Ayrton Koyama , Facundo Memoli , Vanessa Robins , Katharine Turner

Persistent homology is a popular computational tool for analyzing the topology of point clouds, such as the presence of loops or voids. However, many real-world datasets with low intrinsic dimensionality reside in an ambient space of much…

机器学习 · 计算机科学 2024-11-01 Sebastian Damrich , Philipp Berens , Dmitry Kobak

The computational cost of persistent homology is often dominated by the growth of the underlying simplicial filtrations. Many different filtrations exist, each with its own assumptions and trade-offs, but all face some form of this growth…

代数拓扑 · 数学 2026-05-15 António Leitão

We give an $O(n^2(k+\log n))$ algorithm for computing the $k$-dimensional persistent homology of a filtration of clique complexes of cyclic graphs on $n$ vertices. This is nearly quadratic in the number of vertices $n$, and therefore a…

计算几何 · 计算机科学 2019-10-15 Henry Adams , Ethan Coldren , Sean Willmot

In data clustering, it is often desirable to find not just a single partition into clusters but a sequence of partitions that describes the data at different scales (or levels of coarseness). A natural problem then is to analyse and compare…

代数拓扑 · 数学 2025-04-25 Juni Schindler , Mauricio Barahona

A standard way of approximating or discretizing a metric space is by taking its Rips complexes. These approximations for all parameters are often bound together into a filtration, to which we apply the fundamental group or the first…

几何拓扑 · 数学 2020-03-10 Žiga Virk

This paper presents a new clustering algorithm for space-time data based on the concepts of topological data analysis and in particular, persistent homology. Employing persistent homology - a flexible mathematical tool from algebraic…

机器学习 · 统计学 2019-10-28 Umar Islambekov , Yulia Gel

Persistent homology is a relatively new tool often used for \emph{qualitative} analysis of intrinsic topological features in images and data originated from scientific and engineering applications. In this paper, we report novel…

生物大分子 · 定量生物学 2014-12-09 Kelin Xia , Xin Feng , Yiying Tong , Guo Wei We

Hyperuniformity, the suppression of density fluctuations at large length scales, is observed across a wide variety of domains, from cosmology to condensed matter and biological systems. Although the standard definition of hyperuniformity…

统计力学 · 物理学 2024-05-07 Marco Salvalaglio , Dominic J. Skinner , Jörn Dunkel , Axel Voigt

Topological data analysis provides a set of tools to uncover low-dimensional structure in noisy point clouds. Prominent amongst the tools is persistence homology, which summarizes birth-death times of homological features using data objects…

统计方法学 · 统计学 2024-02-05 James Matuk , Sebastian Kurtek , Karthik Bharath

We present an algorithm for computing the barcode of the image of a morphisms in persistent homology induced by an inclusion of filtered finite-dimensional chain complexes. These algorithms make use of the clearing optimization and can be…

代数拓扑 · 数学 2022-01-13 Ulrich Bauer , Maximilian Schmahl

Persistent homology of the Rips filtration allows to track topological features of a point cloud over scales, and is a foundational tool of topological data analysis. Unfortunately, the Rips-filtration is exponentially sized, when…

计算几何 · 计算机科学 2018-07-27 Bernhard Brehm , Hanne Hardering

Persistent homology computes the multiscale topology of a data set by using a sequence of discrete complexes. In this paper, we propose that persistent homology may be a useful tool for studying the structure of the landscape of string…

高能物理 - 理论 · 物理学 2019-04-24 Alex Cole , Gary Shiu
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