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By developing a molecular dynamics model of bacterial chemotaxis, we present the first investigation of tracer statistics in bacterial suspensions where chemotactic effects are considered. We demonstrate that the non-Gaussian statistics of…

生物物理 · 物理学 2017-05-02 Zihan Huang , Pengyu Chen , Guolong Zhu , Yufei Cao , Li-Tang Yan

We conducted a three-dimensional numerical simulation of bioconvection generated by oxygen-reactive chemotactic bacteria. This study investigated the bioconvection patterns, interference between plumes, and the wavelength of bioconvection…

生物物理 · 物理学 2022-12-07 Hideki Yanaoka , Tomomu Nishimura

A suspension of gyrotactic microalgae Chlamydomonas augustae swimming in a cylindrical water vessel in solid-body rotation is studied. Our experiments show that swimming algae form an aggregate around the axis of rotation, whose intensity…

流体动力学 · 物理学 2015-11-05 M. Cencini , M. Franchino , F. Santamaria , G. Boffetta

Immune cells have evolved to recognize and eliminate pathogens, and the efficiency of this process can be measured in a Petri dish. Yet, even if the cells are time-lapse recorded and tracked with high resolution, it is difficult to judge…

定量方法 · 定量生物学 2019-06-21 Claus Metzner

Cell migration often exhibits long-range temporal correlations and anomalous diffusion, even in the absence of external guidance cues such as chemical gradients or topographical constraints. These observations raise a fundamental question:…

Auto-chemotaxis, the directed movement of cells along gradients in chemicals they secrete, is central to the formation of complex spatiotemporal patterns in biological systems. Since the introduction of the Keller--Segel model, numerous…

软凝聚态物质 · 物理学 2025-11-18 Henrik Weyer , David Muramatsu , Erwin Frey

Kinetic-transport equations are, by now, standard models to describe the dynamics of populations of bacteria moving by run-and-tumble. Experimental observations show that bacteria increase their run duration when encountering an increasing…

偏微分方程分析 · 数学 2015-03-16 Benoît Perthame , Min Tang , Nicolas Vauchelet

Cells encounter a diverse array of physical and chemical signals as they navigate their natural surroundings. However, their response to the simultaneous presence of multiple cues remains elusive. Particularly, the impact of topography…

偏微分方程分析 · 数学 2026-03-10 Valeria Cuentas , Elio Espejo

Based on symmetry consideration of migration and shape deformations, we formulate phenomenologically the dynamics of cell crawling in two dimensions. Forces are introduced to change the cell shape. The shape deformations induce migration of…

生物物理 · 物理学 2016-03-23 Takao Ohta , Mitsusuke Tarama , Masaki Sano

Autologous chemotaxis is the process in which cells secrete and detect molecules to determine the direction of fluid flow. Experiments and theory suggest that autologous chemotaxis fails at high cell densities because molecules from other…

生物物理 · 物理学 2023-05-08 Louis González , Andrew Mugler

Extending the classic works of Berg and Purcell on the biophysics of bacterial chemotaxis, we find the optimal chemotactic strategy for the peritrichous bacterium E. Coli in the high and low signal to noise ratio limits. The optimal…

adap-org · 物理学 2009-10-30 S. P. Strong , B. Freedman , William Bialek , R. Koberle

Chemotactic bacteria have been observed to congregate into highly regular patterns. When the bacteria are placed in the center of a dish, a wave of bacteria can travel outward, leaving a regular pattern of spots or stripes in its wake.…

斑图形成与孤子 · 物理学 2009-09-29 William J. Bruno

Propagation of solitary waves in the presence of autocatalysis, diffusion, and symmetry breaking (differential) advection, is being studied. The focus is on drifting (propagating with advection) pulses that form via a convective instability…

斑图形成与孤子 · 物理学 2010-02-08 Arik Yochelis , Moshe Sheintuch

In many situations bacteria move in complex environments, as for example in soils, oceans or the human gut-track microbiome. In these natural environments, carrier fluids such as mucus or reproductive fluids show complex structure…

软凝聚态物质 · 物理学 2022-06-22 Martyna Goral , Eric Clement , Thierry Darnige , Teresa Lopez-Leon , Anke Lindner

The motility of a fish keratocyte on a flat substrate exhibits two distinct regimes: the non-migrating and the migrating one. In both configurations the shape is fixed in time and, when the cell is moving, the velocity is constant in…

细胞行为 · 定量生物学 2016-06-29 Davide Ambrosi , Anna Zanzottera

Eukaryotic cell motility is crucial during development, wound healing, the immune response, and cancer metastasis. Some eukaryotic cells can swim, but cells more commonly adhere to and crawl along the extracellular matrix. We study the…

细胞行为 · 定量生物学 2019-09-02 Melissa H. Mai , Brian A. Camley

We show, using differential dynamic microscopy, that the diffusivity of non-motile cells in a three-dimensional (3D) population of motile E. coli is enhanced by an amount proportional to the active cell flux. While non-motile mutants…

生物物理 · 物理学 2013-11-07 A. Jepson , V. A. Martinez , J. Schwarz-Linek , A. Morozov , W. C. K. Poon

When a single cell senses a chemical gradient and chemotaxes, stochastic receptor-ligand binding can be a fundamental limit to the cell's accuracy. For clusters of cells responding to gradients, however, there is a critical difference: even…

细胞行为 · 定量生物学 2017-11-09 Brian A. Camley , Wouter-Jan Rappel

Self-propelled particles move along circles rather than along a straight line when their driving force does not coincide with their propagation direction. Examples include confined bacteria and spermatozoa, catalytically driven nanorods,…

软凝聚态物质 · 物理学 2008-08-18 Sven van Teeffelen , Hartmut Löwen

Models for chemotaxis are based on gradient sensing of individual organisms. The key contribution of Keller and Segel is showing that erratic movements of individuals may result in an accurate chemotaxis phenomenon as a group. In this paper…

种群与进化 · 定量生物学 2013-07-31 Changwook Yoon , Yong-Jung Kim