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In this article we present a new and not fully employed geometric algebra model. With this model a generalization of the conformal model is achieved. We discuss the geometric objects that can be represented. Furthermore, we show that the…

度量几何 · 数学 2014-09-17 Daniel Klawitter

Diffusion generative models have emerged as a powerful framework for addressing problems in structural biology and structure-based drug design. These models operate directly on 3D molecular structures. Due to the unfavorable scaling of…

生物大分子 · 定量生物学 2024-05-10 Ian Dunn , David Ryan Koes

We point out a somewhat mysterious appearance of $SU_c(3)$ representations, which exhibit the behaviour of three full generations of standard model particles. These representations are found in the Clifford algebra $\mathbb{C}l(6)$, arising…

高能物理 - 理论 · 物理学 2014-10-10 Cohl Furey

The generative modeling of data on manifolds is an important task, for which diffusion models in flat spaces typically need nontrivial adaptations. This article demonstrates how a technique called `trivialization' can transfer the…

机器学习 · 计算机科学 2025-02-13 Yuchen Zhu , Tianrong Chen , Lingkai Kong , Evangelos A. Theodorou , Molei Tao

Current SMILES-based diffusion models for molecule generation typically support only unimodal constraint. They inject conditioning signals at the start of the training process and require retraining a new model from scratch whenever the…

机器学习 · 计算机科学 2025-08-21 Yunzhe Zhang , Yifei Wang , Khanh Vinh Nguyen , Pengyu Hong

Sampling viable 3D structures (e.g., molecules and point clouds) with SE(3)-invariance using diffusion-based models proved promising in a variety of real-world applications, wherein SE(3)-invariant properties can be naturally characterized…

机器学习 · 计算机科学 2024-03-05 Zihan Zhou , Ruiying Liu , Jiachen Zheng , Xiaoxue Wang , Tianshu Yu

Geometric algebra is a powerful framework that unifies mathematics and physics. Since its revival in the middle of the 1960s by David Hestenes, it attracts great attention and has been exploited in many fields such as physics, computer…

数值分析 · 数学 2021-12-28 Azzam Alfarraj , Guo-Wei Wei

Training-free guidance methods for continuous data have seen an explosion of interest due to the fact that they enable foundation diffusion models to be paired with interchangable guidance models. Currently, equivalent guidance methods for…

机器学习 · 统计学 2024-09-12 Thomas J. Kerby , Kevin R. Moon

Generative modeling within constrained sets is essential for scientific and engineering applications involving physical, geometric, or safety requirements (e.g., molecular generation, robotics). We present a unified framework for…

机器学习 · 计算机科学 2026-04-21 Kijung Jeon , Michael Muehlebach , Molei Tao

Real Clifford algebras play a fundamental role in the eight real Altland-Zirnbauer symmetry classes and the classification tables of topological phases. Here, we present another elegant realization of real Clifford algebras in the…

介观与纳米尺度物理 · 物理学 2022-09-14 Yue-Xin Huang , Z. Y. Chen , Xiaolong Feng , Shengyuan A. Yang , Y. X. Zhao

One particular approach to quantum groups (matrix pseudo groups) provides the Manin quantum plane. Assuming an appropriate set of non-commuting variables spanning linearly a representation space one is able to show that the endomorphisms on…

量子代数 · 数学 2009-10-31 Bertfried Fauser

High-dimensional data are often assumed to lie on lower-dimensional manifolds. We study how to construct diffusion processes on this data manifold using only point cloud samples and without access to charts, projections, or other geometric…

机器学习 · 计算机科学 2026-05-21 Victor Kawasaki-Borruat , Clara Grotehans , Pierre Vandergheynst , Adam Gosztolai

We use our Clifford algebra technique, that is nilpotents and projectors which are binomials of the Clifford algebra objects $\gamma^a$ with the property $\{\gamma^a,\gamma^b\}_+ = 2 \eta^{ab}$, for representing quantum gates and quantum…

量子物理 · 物理学 2009-11-13 M. Gregoric , N. S. Mankoc Borstnik

This paper presents a new approach for 3D shape generation, enabling direct generative modeling on a continuous implicit representation in wavelet domain. Specifically, we propose a compact wavelet representation with a pair of coarse and…

计算机视觉与模式识别 · 计算机科学 2022-09-20 Ka-Hei Hui , Ruihui Li , Jingyu Hu , Chi-Wing Fu

Recent 3D molecular generation methods primarily use asynchronous auto-regressive or synchronous diffusion models. While auto-regressive models build molecules sequentially, they're limited by a short horizon and a discrepancy between…

机器学习 · 计算机科学 2026-04-27 Junyi An , Chao Qu , Yun-Fei Shi , Zhijian Zhou , Fenglei Cao , Yuan Qi

In this paper, we make the case that Clifford algebra is the natural framework for root systems and reflection groups, as well as related groups such as the conformal and modular groups: The metric that exists on these spaces can always be…

数学物理 · 物理学 2016-02-22 Pierre-Philippe Dechant

We present a generative modeling framework for atomistic systems that combines score-based diffusion for atomic positions with a novel continuous-time discrete diffusion process for atomic types. This approach enables flexible and…

计算物理 · 物理学 2025-09-17 Nikolaj Rønne , Bjørk Hammer

We introduce a new framework for molecular graph generation with 3D molecular generative models. Our Synthetic Coordinate Embedding (SyCo) framework maps molecular graphs to Euclidean point clouds via synthetic conformer coordinates and…

机器学习 · 计算机科学 2024-06-18 Mohamed Amine Ketata , Nicholas Gao , Johanna Sommer , Tom Wollschläger , Stephan Günnemann

Diffusion-based generative models have achieved promising results recently, but raise an array of open questions in terms of conceptual understanding, theoretical analysis, algorithm improvement and extensions to discrete, structured,…

机器学习 · 计算机科学 2022-09-01 Xingchao Liu , Lemeng Wu , Mao Ye , Qiang Liu

We discuss a Clifford algebra framework for discrete symmetry groups (such as reflection, Coxeter, conformal and modular groups), leading to a surprising number of new results. Clifford algebras allow for a particularly simple description…

表示论 · 数学 2018-10-12 Pierre-Philippe Dechant