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We present a hybrid computational method for simulating the dynamics of macromolecules in solution which couples a mesoscale solver for the fluctuating hydrodynamics (FH) equations with molecular dynamics to describe the macromolecule. The…

软凝聚态物质 · 物理学 2007-05-23 G. Giupponi , G. De Fabritiis , P. V. Coveney

This paper presents the first application of quantum generative models to learned latent space representations of computational fluid dynamics (CFD) data. While recent work has explored quantum models for learning statistical properties of…

机器学习 · 计算机科学 2025-12-30 Achraf Hsain , Fouad Mohammed Abbou

Molecular dynamics (MD) simulations of ions (K$^+$, Na$^+$, Ca$^{2+}$ and Cl$^-$) in aqueous solutions are investigated. Water is described using the SPC/E model. A stochastic coarse-grained description for ion behaviour is presented and…

计算物理 · 物理学 2016-04-27 Radek Erban

The emergence of new nanoporous materials, based e.g. on 2D materials, offers new avenues for water filtration and energy. There is accordingly a need to investigate the molecular mechanisms at the root of the advanced performances of these…

介观与纳米尺度物理 · 物理学 2023-07-10 Geoffrey Monet , Marie-Laure Bocquet , Lydéric Bocquet

Flow Models based on hyperbolic partial differential equations (conservation laws) are a well-established approach for the material flow simulation. Until now, they have been exclusively used for the simulation of cylindrical cargo. This…

数值分析 · 数学 2024-12-20 Domenik Prims , Jennifer Kötz , Simone Göttlich , André Katterfeld

We present a novel scheme for modelling quantum plasmas in the warm dense matter (WDM) regime via a hybrid smoothed particle hydrodynamic - molecular dynamic treatment, here referred to as 'Bohm SPH'. This treatment is founded upon Bohm's…

等离子体物理 · 物理学 2025-01-15 Thomas Campbell , Pontus Svensson , Brett Larder , Daniel Plummer , Sam M. Vinko , Gianluca Gregori

Within the framework of Kohn-Sham density functional theory (DFT), the ability to provide good predictions of water properties by employing a strongly constrained and appropriately normed (SCAN) functional has been extensively demonstrated…

We apply to a liquid of linear molecules the semischematic mode-coupling model, previously introduced to describe the center of mass (COM) slow dynamics of a network-forming molecular liquid. We compare the theoretical predictions and…

软凝聚态物质 · 物理学 2009-10-31 Linda Fabbian , Rolf Schilling , Francesco Sciortino , Piero Tartaglia , Christoph Theis

Molecular Dynamics (MD) simulations are a powerful tool for studying matter at the atomic scale. However, to simulate solids, an initial atomic structure is crucial for the successful execution of MD simulations, but can be difficult to…

计算物理 · 物理学 2024-11-27 Lars Dammann , Richard Kohns , Patrick Huber , Robert H. Meißner

We use quasiparticle anisotropic hydrodynamics to study an azimuthally-symmetric boost-invariant quark-gluon plasma including the effects of both shear and bulk viscosities. In quasiparticle anisotropic hydrodynamics, a single…

核理论 · 物理学 2017-03-15 Mubarak Alqahtani , Mohammad Nopoush , Michael Strickland

We present molecular dynamics simulations of the SPC/E model of water to probe the dynamic properties at temperatures from 350 K down to 190 K and pressures from 2.5GPa (25kbar) down to -300MPa (-3kbar). We compare our results with those…

凝聚态物理 · 物理学 2009-10-31 Francis W. Starr , Francesco Sciortino , H. Eugene Stanley

Obtaining the atomistic structure and dynamics of disordered condensed phase systems from first principles remains one of the forefront challenges of chemical theory. Here we exploit recent advances in periodic electronic structure to show…

Isothermal-isobaric molecular dynamics simulations are used to examine the microscopic structure and some properties of water-methanol liquid mixture. The TIP4P/2005 and SPC/E water models are combined with the united atom TraPPE and the…

软凝聚态物质 · 物理学 2019-03-28 M. Cruz Sanchez , H. Dominguez , O. Pizio

QM/MM hybrid methods employ accurate quantum (QM) models only in regions of interest (defects) and switch to computationally cheaper interatomic potential (MM) models to describe the crystalline bulk. We develop two QM/MM hybrid methods for…

数值分析 · 数学 2015-09-23 Huajie Chen , Christoph Ortner

We develop an efficient parallel multiscale method that bridges the atomistic and mesoscale regimes, from nanometer to micron and beyond, via concurrent coupling of atomistic simulation and mesoscopic dynamics. In particular, we combine an…

计算物理 · 物理学 2020-12-23 Yuying Wang , Zhen Li , Junbo Xu , Chao Yang , George Em Karniadakis

Semi-empirical quantum mechanical methods traditionally expand the electron density in a minimal, valence-only electron basis set. The minimal-basis approximation causes molecular polarization to be underestimated, and hence intermolecular…

化学物理 · 物理学 2015-09-30 Anders S. Christensen , Marcus Elstner , Qiang Cui

Computational Fluid Dynamics (CFD) is central to science and engineering, but faces severe scalability challenges, especially in high-dimensional, multiscale, and turbulent regimes. Traditional numerical methods often become prohibitively…

In plasma edge simulations, kinetic Monte Carlo (MC) is often used to simulate neutral particles and estimate source terms. For large-sized reactors, like ITER and DEMO, high particle collision rates lead to a substantial computational cost…

计算工程、金融与科学 · 计算机科学 2025-09-16 Zhirui Tang , Emil Løvbak , Julian Koellermeier , Giovanni Samaey

The quantum dynamics of electron-nuclear systems is analyzed from the perspective of the exact factorization of the wavefunction, with the aim of defining gauge invariant equations of motion for both the nuclei and the electrons. For pure…

化学物理 · 物理学 2023-10-16 Rocco Martinazzo , Irene Burghardt

The Kinetic-Diffusion Monte Carlo (KDMC) method is a powerful tool for simulating neutral particles in fusion reactors. It is a hybrid fluid-kinetic method that is significantly faster than pure kinetic methods at the cost of a small bias…

数值分析 · 数学 2025-09-05 Thijs Steel , Vince Maes , Giovanni Samaey