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The Bond Graph approach and the Chemical Reaction Network approach to modelling biomolecular systems developed independently. This paper brings together the two approaches by providing a bond graph interpretation of the chemical reaction…

分子网络 · 定量生物学 2019-07-04 Peter J. Gawthrop , Edmund J. Crampin

The latest trends in the adoption of cloud, edge, and distributed computing, as well as a rise in applying AI/ML workloads, have created a need to measure, monitor, and reduce the carbon emissions of these compute-intensive workloads and…

网络与互联网体系结构 · 计算机科学 2024-06-17 Jacob Goldverg , Hasibul Jamil , Elvis Rodriguez , Tevfik Kosar

Across many disciplines, chemical reaction networks (CRNs) are an established population model defined as a system of coupled nonlinear ordinary differential equations. In many applications, for example, in systems biology and epidemiology,…

系统与控制 · 电气工程与系统科学 2023-01-23 Kim G. Larsen , Daniele Toller , Mirco Tribastone , Max Tschaikowski , Andrea Vandin

The large-scale properties of chemical reaction systems, such as the metabolism, can be studied with graph-based methods. To do this, one needs to reduce the information -- lists of chemical reactions -- available in databases. Even for the…

分子网络 · 定量生物学 2009-09-25 Petter Holme

Deep learning (DL) methods have achieved state-of-the-art performance in the task of single image rain removal. Most of current DL architectures, however, are still lack of sufficient interpretability and not fully integrated with physical…

图像与视频处理 · 电气工程与系统科学 2020-05-05 Hong Wang , Qi Xie , Qian Zhao , Deyu Meng

We introduce a new approach using computer vision to predict the land surface displacement from subsurface geometry images for Carbon Capture and Sequestration (CCS). CCS has been proved to be a key component for a carbon neutral society.…

计算机视觉与模式识别 · 计算机科学 2024-03-20 Wei Chen , Yunan Li , Yuan Tian

Network percolation has recently been proposed as a method to characterize the global structure of an urban system form the bottom-up. This paper proposes to extend urban network percolation in a multi-dimensional way, to take into account…

物理与社会 · 物理学 2019-03-19 Juste Raimbault

Chemical reaction networks (CRNs) model the behavior of chemical reactions in well-mixed solutions and they can be designed to perform computations. In this tutorial we give an overview of various computational models for CRNs. Moreover, we…

新兴技术 · 计算机科学 2018-11-27 Robert Brijder

As a common weather, rain streaks adversely degrade the image quality. Hence, removing rains from an image has become an important issue in the field. To handle such an ill-posed single image deraining task, in this paper, we specifically…

图像与视频处理 · 电气工程与系统科学 2022-12-27 Hong Wang , Qi Xie , Qian Zhao , Yuexiang Li , Yong Liang , Yefeng Zheng , Deyu Meng

The analysis of complex reaction networks is of great importance in several chemical and biochemical fields (interstellar chemistry, prebiotic chemistry, reaction mechanism, etc). In this article, we propose to simultaneously refine and…

分子网络 · 定量生物学 2008-03-11 Raphaël Plasson , Hugues Bersini , Axel Brandenburg

We present a differentiable formulation of abstract chemical reaction networks (CRNs) that can be trained to solve a variety of computational tasks. Chemical reaction networks are one of the most fundamental computational substrates used by…

分子网络 · 定量生物学 2023-02-07 Alexander Mordvintsev , Ettore Randazzo , Eyvind Niklasson

Recent deep-learning-based approaches to single-image reflection removal have shown promising advances, primarily for two reasons: 1) the utilization of recognition-pretrained features as inputs, and 2) the design of dual-stream interaction…

计算机视觉与模式识别 · 计算机科学 2025-04-01 Hao Zhao , Mingjia Li , Qiming Hu , Xiaojie Guo

We propose a direct optimization framework for learning reduced and sparse chemical reaction networks (CRNs) from time-series trajectory data. In contrast to widely used indirect methods-such as those based on sparse identification of…

分子网络 · 定量生物学 2025-08-27 Maurice Filo , Mustafa Khammash

Proposals for molecular communication networks as part of a future internet of bio-nano-things have become more intricate and the question of practical implementation is gaining more importance. One option is to apply detailed chemical…

新兴技术 · 计算机科学 2024-11-20 Alexander Wietfeld , Marina Wendrich , Sebastian Schmidt , Wolfgang Kellerer

Team C2CNT, or team Carbon dioxide to carbon nanotubes, proprietary technology directly removes the widest range of carbon dioxide from the ecosystem. C2CNT technology simply transforms low to high carbon dioxide into carbon and oxygen, and…

材料科学 · 物理学 2017-10-20 Stuart Licht

Living systems operate out of equilibrium, continuously consuming energy to sustain organised, functional states. Their emergent behaviour usually relies on a set of interconnected chemical reaction networks (CRNs) driven by external fluxes…

统计力学 · 物理学 2026-02-03 Shiling Liang , Paolo De Los Rios , Daniel Maria Busiello

A dynamical system obtains a wide variety of kinetic realizations, which is advantageous for the analysis of biochemical systems. A reaction network, derived from a dynamical system, may or may not possess some properties needed for a…

分子网络 · 定量生物学 2024-05-01 Dylan Antonio Talabis , Eduardo Mendoza

Cement production is among the largest contributors to industrial air pollution, emitting ~3 Mt NOx/year. The industry-standard mitigation approach, selective non-catalytic reduction (SNCR), exhibits low NH3 utilization efficiency,…

We define a subclass of Chemical Reaction Networks called Post-Translational Modification systems. Important biological examples of such systems include MAPK cascades and two-component systems which are well-studied experimentally as well…

分子网络 · 定量生物学 2011-07-19 Elisenda Feliu , Carsten Wiuf

The use of mathematical models has helped to shed light on countless phenomena in chemistry and biology. Often, though, one finds that systems of interest in these fields are dauntingly complex. In this paper, we attempt to synthesize and…

分子网络 · 定量生物学 2007-09-04 Mark Lipson