Variable elimination in post-translational modification reaction networks with mass-action kinetics
Abstract
We define a subclass of Chemical Reaction Networks called Post-Translational Modification systems. Important biological examples of such systems include MAPK cascades and two-component systems which are well-studied experimentally as well as theoretically. The steady states of such a system are solutions to a system of polynomial equations with as many variables as equations. Even for small systems the task of finding the solutions is daunting. We develop a mathematical framework based on the notion of a cut, which provides a linear elimination procedure to reduce the number of variables in the system. The steady states are parameterized algebraically by a set of "core" variables, and the non-negative steady states correspond to non-negative values of the core variables. Further, minimal cuts are the connected components in the species graph and provide conservation laws. A criterion for when a set of independent conservation laws can be derived from cuts is given.
Keywords
Cite
@article{arxiv.1107.3531,
title = {Variable elimination in post-translational modification reaction networks with mass-action kinetics},
author = {Elisenda Feliu and Carsten Wiuf},
journal= {arXiv preprint arXiv:1107.3531},
year = {2011}
}