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Prior work inspired by compression algorithms has described how the Burrows Wheeler Transform can be used to create a distance measure for bioinformatics problems. We describe issues with this approach that were not widely known, and…

密码学与安全 · 计算机科学 2020-02-19 Edward Raff , Charles Nicholas , Mark McLean

The main motivation of this paper is to introduce the permutation Jensen-Shannon distance, a symbolic tool able to quantify the degree of similarity between two arbitrary time series. This quantifier results from the fusion of two concepts,…

数据分析、统计与概率 · 物理学 2022-04-20 Luciano Zunino , Felipe Olivares , Haroldo V. Ribeiro , Osvaldo A. Rosso

In many modern data sets, High dimension low sample size (HDLSS) data is prevalent in many fields of studies. There has been an increased focus recently on using machine learning and statistical methods to mine valuable information out of…

最优化与控制 · 数学 2023-05-23 Srivathsan Amruth , Xin Yee Lam

Dynamic Time Warping (DTW), and its constrained (CDTW) and weighted (WDTW) variants, are time series distances with a wide range of applications. They minimize the cost of non-linear alignments between series. CDTW and WDTW have been…

机器学习 · 计算机科学 2021-11-29 Matthieu Herrmann , Geoffrey I. Webb

The maximum mean discrepancy and Wasserstein distance are popular distance measures between distributions and play important roles in many machine learning problems such as metric learning, generative modeling, domain adaption, and…

机器学习 · 计算机科学 2025-01-22 Dong Qiao , Jicong Fan

With the continued digitization of societal processes, we are seeing an explosion in available data. This is referred to as big data. In a research setting, three aspects of the data are often viewed as the main sources of challenges when…

数据库 · 计算机科学 2022-05-24 Lu Chen , Yunjun Gao , Xuan Song , Zheng Li , Yifan Zhu , Xiaoye Miao , Christian S. Jensen

Identifying change points (CPs) in a time series is crucial to guide better decision making across various fields like finance and healthcare and facilitating timely responses to potential risks or opportunities. Existing Change Point…

机器学习 · 计算机科学 2023-06-09 Kopal Garg , Jennifer Yu , Tina Behrouzi , Sana Tonekaboni , Anna Goldenberg

The study of correlations between brain regions is an important chapter of the analysis of large-scale brain spatiotemporal dynamics. In particular, novel methods suited to extract dynamic changes in mutual correlations are needed. Here we…

神经元与认知 · 定量生物学 2018-10-11 Jeremi K. Ochab , Wojciech Tarnowski , and Maciej A. Nowak , Dante R. Chialvo

Time-series anomaly detection is critical for ensuring safety in high-stakes applications, where robustness is a fundamental requirement rather than a mere performance metric. Addressing the vulnerability of these systems to adversarial…

机器学习 · 计算机科学 2026-05-11 Shijie Liu , Tansu Alpcan , Christopher Leckie , Sarah Erfani

In this work, we consider the problem of sequence-to-sequence alignment for signals containing outliers. Assuming the absence of outliers, the standard Dynamic Time Warping (DTW) algorithm efficiently computes the optimal alignment between…

计算机视觉与模式识别 · 计算机科学 2021-08-30 Nikita Dvornik , Isma Hadji , Konstantinos G. Derpanis , Animesh Garg , Allan D. Jepson

Existing deep embedding methods in vision tasks are capable of learning a compact Euclidean space from images, where Euclidean distances correspond to a similarity metric. To make learning more effective and efficient, hard sample mining is…

计算机视觉与模式识别 · 计算机科学 2016-10-28 Chen Huang , Chen Change Loy , Xiaoou Tang

In this paper the major objective is to design and analyze the suitability of Gaussian similarity measure for intrusion detection. The objective is to use this as a distance measure to find the distance between any two data samples of…

密码学与安全 · 计算机科学 2016-04-27 Gunupudi Rajesh Kumar , N Mangathayaru , G Narsimha

Person re-identification (re-id) aims to match pedestrians observed by disjoint camera views. It attracts increasing attention in computer vision due to its importance to surveillance system. To combat the major challenge of cross-view…

计算机视觉与模式识别 · 计算机科学 2017-09-08 Lin Wu , Yang Wang , Junbin Gao , Xue Li

Time series discords are a useful primitive for time series anomaly detection, and the matrix profile is capable of capturing discord effectively. There exist many research efforts to improve the scalability of discord discovery with…

Elastic distances like dynamic time warping (DTW) are central to time series machine learning because they compare sequences under local temporal misalignment. Soft-DTW is an adaptation of DTW that can be used as a gradient-based loss by…

机器学习 · 计算机科学 2026-05-04 Christopher Holder , Anthony Bagnall

When modeling coexpression networks from high-throughput time course data, Pearson Correlation Coefficient (PCC) is one of the most effective and popular similarity functions. However, its reliability is limited since it cannot capture…

分子网络 · 定量生物学 2014-10-17 Samantha Riccadonna , Giuseppe Jurman , Roberto Visintainer , Michele Filosi , Cesare Furlanello

The dynamic time warping (DTW) distance has been used as a misfit function for wave-equation inversion to mitigate the local minima issue. However, the original DTW distance is not smooth; therefore it can yield a strong discontinuity in…

地球物理 · 物理学 2022-03-22 Fuqiang Chen , Daniel Peter , Matteo Ravasi

With recent advances in sensing and tracking technology, trajectory data is becoming increasingly pervasive and analysis of trajectory data is becoming exceedingly important. A fundamental problem in analyzing trajectory data is that of…

计算几何 · 计算机科学 2013-03-08 Swaminathan Sankararaman , Pankaj K. Agarwal , Thomas Mølhave , Arnold P. Boedihardjo

Multivariate Time Series (MTS) anomaly detection focuses on pinpointing samples that diverge from standard operational patterns, which is crucial for ensuring the safety and security of industrial applications. The primary challenge in this…

机器学习 · 计算机科学 2024-04-19 Haili Sun , Yan Huang , Lansheng Han , Cai Fu , Chunjie Zhou

We propose a continuous-time formulation of persistent contrastive divergence (PCD) for maximum likelihood estimation (MLE) of unnormalised densities. Our approach expresses PCD as a coupled, multiscale system of stochastic differential…

机器学习 · 统计学 2025-10-03 Paul Felix Valsecchi Oliva , O. Deniz Akyildiz , Andrew Duncan
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