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We show that simple stochastic models of genome evolution lead to power law asymptotics of protein domain family size distribution. These models, called Birth, Death and Innovation Models (BDIM), represent a special class of balanced…

基因组学 · 定量生物学 2007-05-23 Georgy P. Karev , Yuri I. Wolf , Eugene V. Koonin

The phenomenon of spatial clustering induced by death and reproduction in a population of anomalously diffusing individuals is studied analytically. The possibility of social behaviors affecting the migration strategies has been taken into…

种群与进化 · 定量生物学 2015-05-30 Piero Olla

This paper concentrates on the general birth-death processes with two different types of catastrophes. The Laplace transform of transition probability function for birth-death processes with two-type catastrophes are is successfully…

概率论 · 数学 2024-04-09 Junping Li

We consider a continuous time Markov process on $\mathbb{N}_0$ which can be interpreted as generalized alternating birth-death process in a non-autonomous random environment. Depending on the status of the environment the process either…

概率论 · 数学 2020-05-13 Hans Daduna

A class of Fleming-Viot processes with decaying sampling rates and $\alpha$-stable motions that correspond to distributions with growing populations are introduced and analyzed. Almost sure long-time scaling limits for these processes are…

概率论 · 数学 2021-10-12 Michael A. Kouritzin , Khoa Lê

The Fokker-Planck equation is considered, which is connected to the birth and death process with immigration by the Poisson transform. The fractional derivative in time variable is introduced into the Fokker-Planck equation. From its…

高能物理 - 唯象学 · 物理学 2009-10-31 N. Suzuki , M. Biyajima

We consider a stochastic logistic growth model involving both birth and death rates in the drift and diffusion coefficients for which extinction eventually occurs almost surely. The associated complete Fokker-Planck equation describing the…

统计理论 · 数学 2013-07-09 Fabien Campillo , Marc Joannides , Irène Larramendy-Valverde

In evolutionary processes, population structure has a substantial effect on natural selection. Here, we analyze how motion of individuals affects constant selection in structured populations. Motion is relevant because it leads to changes…

种群与进化 · 定量生物学 2017-10-10 Madison S. Krieger , Alex McAvoy , Martin A. Nowak

In this article we provide a sufficient condition for a continuous-state branching process with immigration (CBI process) to not hit its boundary, i.e. for non-extinction. Our result applies to arbitrary dimension $d \geq 1$ and is…

概率论 · 数学 2022-03-17 Martin Friesen , Peng Jin , Barbara Rüdiger

We study continuous-time birth-death type processes, where individuals have independent and identically distributed lifetimes, according to a random variable Q, with E[Q]=1, and where the birth rate if the population is currently in state…

概率论 · 数学 2014-08-05 Frank Ball , Tom Britton , Peter Neal

In this paper we study strong solutions of some non-local difference-differential equations linked to a class of birth-death processes arising as discrete approximations of Pearson diffusions by means of a spectral decomposition in terms of…

概率论 · 数学 2020-08-18 Giacomo Ascione , Nikolai Leonenko , Enrica Pirozzi

The influence of migration on the stochastic dynamics of subdivided populations is still an open issue in various evolutionary models. We develop here a self-consistent mean-field-like method in order to determine the effects of migration…

统计力学 · 物理学 2014-04-10 Pierangelo Lombardo , Andrea Gambassi , Luca Dall'Asta

The survival of natural populations may be greatly affected by environmental conditions that vary in space and time. We look at a population residing in two locations (patches) coupled by migration, in which the local conditions fluctuate…

统计力学 · 物理学 2021-08-11 Tal Agranov , Guy Bunin

We review localization with non-Hermitian time evolution as applied to simple models of population biology with spatially varying growth profiles and convection. Convection leads to a constant imaginary vector potential in the…

无序系统与神经网络 · 物理学 2009-10-31 Karin A. Dahmen , David R. Nelson , Nadav M. Shnerb

We study fixation probabilities and times as a consequence of neutral genetic drift in subdivided populations, motivated by a model of the cultural evolutionary process of language change that is described by the same mathematics as the…

种群与进化 · 定量生物学 2015-05-26 R A Blythe

A fundamental problem in Bayesian inference and statistical machine learning is to efficiently sample from multimodal distributions. Due to metastability, multimodal distributions are difficult to sample using standard Markov chain Monte…

机器学习 · 统计学 2019-05-27 Yulong Lu , Jianfeng Lu , James Nolen

We consider an exponentially growing population of cells undergoing mutations and ask about the effect of reproductive fluctuations (genetic drift) on its long-term evolution. We combine first step analysis with the stochastic dynamics of a…

种群与进化 · 定量生物学 2022-03-14 Arman Angaji , Christoph Velling , Johannes Berg

The present paper is devoted to the study of the long term dynamics of diffusion processes modelling a single species that experiences both demographic and environmental stochasticity. In our setting, the long term dynamics of the diffusion…

概率论 · 数学 2024-07-10 Alexandru Hening , Weiwei Qi , Zhongwei Shen , Yingfei Yi

In the long run, the eventual extinction of any biological population is an inevitable outcome. While extensive research has focused on the average time it takes for a population to go extinct under various circumstances, there has been…

种群与进化 · 定量生物学 2023-07-18 David Kessler , Nadav M. Shnerb

In this paper, we study continuous-state interacting multi-type branching processes with immigration (CIMBI processes), where inter-specific interactions -- whether competitive, cooperative, or of a mixed type -- are proportional to the…

概率论 · 数学 2026-04-09 Peng Jin , Jiaqi Zhou