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Ecological selection is a major driver of community assembly. Selection is classified as stabilizing when species with intermediate trait values gain the highest reproductive success, whereas selection is considered directional when fitness…

种群与进化 · 定量生物学 2021-05-13 DeMalach Niv , Po-Ju Ke , Tadashi Fukami

Roots provide basic functions to plants such as water/nutrient uptake and anchoring in soil. The growth and development of root systems contribute to colonizing the surrounding soil and optimizing the access to resources. It is usually…

软凝聚态物质 · 物理学 2019-04-24 M. Fakih , J. -Y. Delenne , F. Radjai , T. Fourcaud

Mutations in a microbial population can increase the frequency of a genotype not only by increasing its exponential growth rate, but also by decreasing its lag time or adjusting the yield (resource efficiency). The contribution of multiple…

种群与进化 · 定量生物学 2018-02-15 Michael Manhart , Bharat V. Adkar , Eugene I. Shakhnovich

To improve understanding of the physiology, ecology and regeneration requirements of black poplar (Populus nigra), a severely endangered tree species in Europe, we analysed the biochemical composition of seeds from 20 families derived from…

Vorticity is a key characteristic of flow patterns that determine wildland fire behavior, frontal evolution, and wind-canopy interaction. Investigating the role of vorticity in the flow fields around vegetation can help us better understand…

流体动力学 · 物理学 2024-09-11 Dorianis M. Perez , Jesse M. Canfield , Rodman R. Linn , Kevin Speer

The soil seed bank is a major component of plant communities. However, long-term analyses of the dynamics of the seed bank and the ensuing vegetation are rare. Here, we studied the dynamics in plant communities with high dominance of…

种群与进化 · 定量生物学 2023-01-31 Niv DeMalach , Jaime Kigel , Marcelo Sternberg

Wind energy plays an increasing role in the supply of energy world-wide. The energy output of a wind farm is highly dependent on the weather condition present at the wind farm. If the output can be predicted more accurately, energy…

人工智能 · 计算机科学 2011-09-12 Katya Vladislavleva , Tobias Friedrich , Frank Neumann , Markus Wagner

Recent experiments suggest that the interplay between cells and the mechanics of their substrate gives rise to a diversity of morphological and migrational behaviors. Here, we develop a Cellular Potts Model of polarizing cells on a…

In the probabilistic energy forecasting literature, emphasis is mainly placed on deriving marginal predictive densities for which each random variable is dealt with individually. Such marginals description is sufficient for power systems…

应用统计 · 统计学 2016-03-23 Faranak Golestaneh , Pierre Pinson , Hoay Beng Gooi

The folding ability of a heteropolymer model for proteins subject to Monte Carlo dynamics on a simple cubic lattice is shown to be strongly correlated with the energy gap between the native state and the structurally dissimilar part of the…

凝聚态物理 · 物理学 2007-05-23 Aaron R. Dinner , Victor Abkevich , Eugene Shakhnovich , Martin Karplus

Post-genomic research deals with challenging problems in screening genomes of organisms for particular functions or potential for being the targets of genetic engineering for desirable biological features. 'Phenotyping' of wild type and…

Early and precise identification of plant diseases, especially in potato crops is important to ensure the health of the crops and ensure the maximum yield . Potato leaf diseases, such as Early Blight and Late Blight, pose significant…

计算机视觉与模式识别 · 计算机科学 2026-03-31 Shakil Mia , Umme Habiba , Urmi Akter , SK Rezwana Quadir Raisa , Jeba Maliha , Md. Iqbal Hossain , Md. Shakhauat Hossan Sumon

Understanding the relationship between genomic variation and variation in phenotypes for quantitative traits such as physiology, yield, fitness or behavior, will provide important insights for both predicting adaptive evolution and for…

For applications like plant disease detection, usually, a model is trained on publicly available data and tested on field data. This means that the test data distribution is not the same as the training data distribution, which affects the…

计算机视觉与模式识别 · 计算机科学 2023-10-11 Shikha Gupta , Soma Chakraborty , Renu Rameshan

Micropatterned substrates are often used to standardize cell experiments and to quantitatively study the relation between cell shape and function. Moreover, they are increasingly used in combination with traction force microscopy on soft…

细胞行为 · 定量生物学 2015-06-19 Philipp J. Albert , Ulrich S. Schwarz

Plants emission of volatile organic compounds (VOCs) is involved in a wide class of ecological functions, as VOCs play a crucial role in plants interactions with biotic and abiotic factors. Accordingly, they vary widely across species and…

定量方法 · 定量生物学 2017-04-27 Gianna Vivaldo , Elisa Masi , Cosimo Taiti , Guido Caldarelli , Stefano Mancuso

Evolution on neutral networks of genotypes has been found in models to concentrate on genotypes with high mutational robustness, to a degree determined by the topology of the network. Here analysis is generalized beyond neutral networks to…

种群与进化 · 定量生物学 2015-09-01 Lee Altenberg

In this study, through various tests one theoretical model is presented to describe the relationship between promoter strength and its nucleotide sequence. Our analysis shows that, promoter strength is greatly influenced by nucleotide…

分子网络 · 定量生物学 2015-03-13 Jingwei Li , Yunxin Zhang

In vivo and in vitro cells rely on the support of an underlying biocompatible substrate, such as the extracellular matrix or a culture substrate, to spread and proliferate. The mechanical and chemical properties of such structures play a…

软凝聚态物质 · 物理学 2021-11-04 Diogo E. P. Pinto , Margarida M. Telo da Gama , Nuno A. M. Araujo

We have studied the growth kinetics of isolated precipitates growing from a supersaturated matrix in 3-dimensions (3-D) using phase field models; we assume isotropic interfacial energy consider both constant and variable diffusivity. We…

材料科学 · 物理学 2014-12-23 Arijit Roy , Mogadalai P Gururajan