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We use the worm-like chain model to analytically calculate the linear response of a grafted semiflexible polymer to a uniform force field. The result is a function of the bending stiffness, the temperature, the total contour length, and the…

软凝聚态物质 · 物理学 2009-11-10 Panayotis Benetatos , Erwin Frey

We develop an analytical method for studying the properties of a non-interacting Wormlike Chain (WLC) in confined geometries. The mean field-like theory replaces the rigid constraints of confinement with average constraints, thus allowing…

软凝聚态物质 · 物理学 2009-11-13 Greg Morrison , D. Thirumalai

To study the elastic properties of rod-like DNA nanostructures, we perform long simulations of these structure using the oxDNA coarse-grained model. By analysing the fluctuations in these trajectories we obtain estimates of the bend and…

The Kremer-Grest (KG) model is a standard for studying generic polymer properties. Here we have equilibrated KG melts up to and beyond $200$ entanglements per chain for varying chain stiffness. We present methods for estimating the Kuhn…

软凝聚态物质 · 物理学 2020-03-16 Carsten Svaneborg , Ralf Everaers

Twisted assemblies of filaments in ropes, cables and bundles are essential structural elements in wide use in macroscopic materials as well as within the cells and tissues of living organisms. We develop the unique, non-linear elastic…

软凝聚态物质 · 物理学 2015-05-18 Gregory M. Grason

The most conspicuous property of a semiflexible polymer is its persistence length, defined as the decay length of tangent correlations along its contour. Using an efficient stochastic growth algorithm to sample polymers embedded in a…

软凝聚态物质 · 物理学 2015-06-23 Sebastian Schöbl , Sebastian Sturm , Wolfhard Janke , Klaus Kroy

We present a theoretical framework for the linear and nonlinear visco-elastic properties of reversibly crosslinked networks of semiflexible polymers. In contrast to affine models where network strain couples to the polymer end-to-end…

软凝聚态物质 · 物理学 2016-07-06 Jan Plagge , Andreas Fischer , Claus Heussinger

The dynamic response of prestressed semiflexible biopolymers is characterized by the propagation and relaxation of tension, which arises due to the near inextensibility of a stiff backbone. It is coupled to the dynamics of contour length…

软凝聚态物质 · 物理学 2009-10-16 B. Obermayer , E. Frey

We study the mechanical and conformational properties of networks of helical polymers with a combination of Monte Carlo simulations based on the Wang-Landau algorithm and the Three-chain Model. We find that the stress-strain behavior of…

材料科学 · 物理学 2007-05-23 Gustavo A. Carri , Richard Batman , Vikas Varshney , Taner E. Dirama

Nucleic acids are highly deformable helical molecules constantly stretched, twisted and bent in their biological functioning. Single molecule experiments have shown that double stranded (ds)-RNA and standard ds-DNA have opposite…

软凝聚态物质 · 物理学 2023-06-28 Marco Zoli

We consider an inextensible, semiflexible polymer or worm-like chain which is confined in the transverse direction by a parabolic potential and subject to a longitudinal force at the ends, so that the polymer is stretched out and…

软凝聚态物质 · 物理学 2015-05-28 Theodore W. Burkhardt

Recently many important biopolymers have been found to possess intrinsic curvature. Tubulin protofilaments in animal cells, FtsZ filaments in bacteria and double stranded DNA are examples. We examine how intrinsic curvature influence the…

软凝聚态物质 · 物理学 2012-03-29 Surya K. Ghosh , Kulveer Singh , Anirban Sain

Twist stiffness and an asymmetric bending stiffness of a polymer or a polymer bundle is captured by the elastic ribbon model. We investigate the effects a ring geometry induces to a thermally fluctuating ribbon, finding bend-bend coupling…

生物大分子 · 定量生物学 2008-02-07 Karen Alim , Erwin Frey

For an understanding of DNA elasticity at high mechanical loads (F > 30 pN), its helical nature needs to be taken into account, in the form of coupling between the twist and stretch degrees of freedom. The prevailing model for DNA…

生物物理 · 物理学 2016-06-29 Onno D. Broekmans , Graeme A. King , Greg J. Stephens , Gijs J. L. Wuite

In this paper the exact solution and correlation functions for a double-chain Ising model with multi-spin interactions and symmetric Hamiltonian density are obtained. The study employs the transfer matrix method to derive fundamental…

统计力学 · 物理学 2025-11-21 Pavel Khrapov , Stepan Shchurenkov

Thermally actuated twisted and coiled polymer (TCP) artificial muscles exhibit exceptional specific work capacities but are limited by an inherent competition between load-bearing capacity and actuation stroke. To address this limitation,…

软凝聚态物质 · 物理学 2026-02-09 Ye Xiao , Zhao Luo , Falin Tian , Xinghao Hu , Dabiao Liu , Chun Li

We present an experiment which aim is to investigate the mechanical properties of a static granular assembly. The piling is an horizontal 3D granular layer confined in a box, we apply a localized extra force at the surface and the spatial…

凝聚态物理 · 物理学 2016-08-15 Guillaume Reydellet , Eric Clément

We investigate the presence of topological twistons in crystalline polyethylene. We describe crystalline polyethylene with a model that couples the torsional and longitudinal degrees of freedom of the polymeric chain by means of a system of…

化学物理 · 物理学 2009-11-06 E. Ventura , A. M. Simas , D. Bazeia

The cohesion and conductance of a point contact in a two-dimensional metallic nanowire are investigated in an independent-electron model with hard-wall boundary conditions. All properties of the nanowire are related to the Green's function…

介观与纳米尺度物理 · 物理学 2007-05-23 J. Burki , C. A. Stafford , X. Zotos , D. Baeriswyl

Polymer entanglements lead to complicated topological constraints and interactions between neighbouring chains in a dense solution or melt. Entanglements can be treated in a mean field approach, within the famous reptation model, since they…

软凝聚态物质 · 物理学 2007-05-23 S. Kutter , E. M. Terentjev