相关论文: Tight Bounds for the Number of Absent Subsequences

A word $u$ is a subsequence of another word $w$ if $u$ can be obtained from $w$ by deleting some of its letters. The word $w$ with alph$(w)=\Sigma$ is called $k$-subsequence universal if the set of subsequences of length $k$ of $w$ contains…

Given a string $w$, another string $v$ is said to be a subsequence of $w$ if $v$ can be obtained from $w$ by removing some of its letters; on the other hand, $v$ is called an absent subsequence of $w$ if $v$ is not a subsequence of $w$. The…

A subsequence of a word $w$ is a word $u$ such that $u = w[i_1] w[i_2] \dots w[i_{k}]$, for some set of indices $1 \leq i_1 < i_2 < \dots < i_k \leq \lvert w\rvert$. A word $w$ is $k$-subsequence universal over an alphabet $\Sigma$ if every…

A subsequence of a word $w$ is a word $u$ such that $u = w[i_1] w[i_2] , \dots w[i_{|u|}]$, for some set of indices $1 \leq i_1 < i_2 < \dots < i_k \leq |w|$. A word $w$ is $k$-subsequence universal over an alphabet $\Sigma$ if every word…

A subsequence of a word $w$ is a word $u$ such that $u = w[i_1] w[i_2] \cdots w[i_k]$, for some set of indices $1 \leq i_1 < i_2 < \dots < i_k \leq \vert w \vert$. A word $w$ is \emph{$k$-subsequence universal} over an alphabet $\Sigma$ if…

An absent factor of a string $w$ is a string $u$ which does not occur as a contiguous substring (a.k.a. factor) inside $w$. We extend this well-studied notion and define absent subsequences: a string $u$ is an absent subsequence of a string…

The observed frequency of the longest proper prefix, the longest proper suffix, and the longest infix of a word $w$ in a given sequence $x$ can be used for classifying $w$ as avoided or overabundant. The definitions used for the expectation…

In this paper, we study a series of algorithmic problems related to the subsequences occurring in the strings of a given language, under the assumption that this language is succinctly represented by a grammar generating it, or an automaton…

We consider the general problem of the Longest Common Subsequence (LCS) on weighted sequences. Weighted sequences are an extension of classical strings, where in each position every letter of the alphabet may occur with some probability.…

Sequence comparison is a prerequisite to virtually all comparative genomic analyses. It is often realised by sequence alignment techniques, which are computationally expensive. This has led to increased research into alignment-free…

The deviation of the observed frequency of a word $w$ from its expected frequency in a given sequence $x$ is used to determine whether or not the word is avoided. This concept is particularly useful in DNA linguistic analysis. The value of…

An absent word of a word y of length n is a word that does not occur in y. It is a minimal absent word if all its proper factors occur in y. Minimal absent words have been computed in genomes of organisms from all domains of life; their…

A word $u=u_1\dots u_n$ is a scattered factor of a word $w$ if $u$ can be obtained from $w$ by deleting some of its letters: there exist the (potentially empty) words $v_0,v_1,..,v_n$ such that $w = v_0u_1v_1...u_nv_n$. The set of all…

In this paper, we consider a variant of the classical algorithmic problem of checking whether a given word $v$ is a subsequence of another word $w$. More precisely, we consider the problem of deciding, given a number $p$ (defining a…

A string $w$ is called a minimal absent word (MAW) for a string $S$ if $w$ does not occur as a substring in $S$ and all proper substrings of $w$ occur in $S$. MAWs are well-studied combinatorial string objects that have potential…

Let $\mathcal{A}$ be a sequence of $rk$ terms which is made up of $k$ distinct integers each appearing exactly $r$ times in $\mathcal{A}$. The sum of all terms of a subsequence of $\mathcal{A}$ is called a subsequence sum of $\mathcal{A}$.…

A string $w$ is called a minimal absent word (MAW) for another string $T$ if $w$ does not occur (as a substring) in $T$ and any proper substring of $w$ occurs in $T$. State-of-the-art data structures for reporting the set $\mathsf{MAW}(T)$…

Minimal absent words (MAW) of a genomic sequence are subsequences that are absent themselves but the subwords of which are all present in the sequence. The characteristic distribution of genomic MAWs as a function of their length has been…

Sequence comparison is a prerequisite to virtually all comparative genomic analyses. It is often realized by sequence alignment techniques, which are computationally expensive. This has led to increased research into alignment-free…

A non-empty word $w$ is a border of the word $u$ if $\vert w\vert<\vert u\vert$ and $w$ is both a prefix and a suffix of $u$. A word $u$ with the border $w$ is closed if $u$ has exactly two occurrences of $w$. A word $u$ is privileged if…