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Structure and dynamics of a polymer under confinement gets significantly altered due to the imposed geometric restrictions. Using molecular dynamics simulations, here, we explore the effect of cylindrical confinement on the kinetics of…

软凝聚态物质 · 物理学 2026-03-11 Shubham Thwal , Suman Majumder

We examine the thermally-induced fracture of an unstrained polymer chain of discrete segments coupled by an anharmonic potential by means of Molecular Dynamics simulation with a Langevin thermostat. Cases of both under- and over-damped…

软凝聚态物质 · 物理学 2015-05-27 J. Paturej , A. Milchev , V. G. Rostiashvili , T. A. Vilgis

We present a scaling theory describing the collapse of a homopolymer chain in poor solvent. At time t after the beginning of the collapse, the original Gaussian chain of length N is streamlined to form N/g segments of length R(t), each…

软凝聚态物质 · 物理学 2009-11-07 Cameron F. Abrams , Namkyung Lee , Sergei Obukhov

Motivated by results from an earlier Brownian Dynamics (BD) simulation for the collapse of a single, stiff polymer in a poor solvent [B. Schnurr, F. C. MacKintosh, and D. R. M. Williams, Europhys. Lett. 51 (3), 279 (2000)] we calculate the…

软凝聚态物质 · 物理学 2009-11-07 B. Schnurr , F. Gittes , F. C. MacKintosh

Constitutive equations are derived for the viscoelastic response of rubbery polymers at finite strains. A polymer is thought of as a network of long chains connected to temporary junctions. At a random time, a chain detaches from a…

软凝聚态物质 · 物理学 2007-05-23 Aleksey D. Drozdov , Al Dorfmann

Using a simple three-dimensional lattice copolymer model and Monte Carlo dynamics, we study the collapse and folding of protein-like heteropolymers. The polymers are 27 monomers long and consist of two monomer types. Although these chains…

凝聚态物理 · 物理学 2009-10-22 Nicholas D. Socci , Jose' Nelson Onuchic

We study the nonequilibrium kinetics during the coil-globule transition of a flexible polymer chain with active beads after a quench from good to poor solvent condition using molecular dynamics simulation. Activity for each bead is…

软凝聚态物质 · 物理学 2022-04-13 Subhajit Paul , Suman Majumder , Wolfhard Janke

We study the dynamics of a polymer when it is quenched from a $\theta$ solvent into a good or bad solvent by means of a Langevin equation. The variation of the radius of gyration is studied as a function of time. For the first stage of…

软凝聚态物质 · 物理学 2008-02-03 E. Pitard , H. Orland

We define a lattice model for the interaction of a polymer with water. We solve the model in a suitable approximation. In the case of a non-polar homopolymer, for reasonable values of the parameters, the polymer is found in a non-compact…

统计力学 · 物理学 2009-10-31 Pierpaolo Bruscolini , Lapo Casetti

We investigate the dynamics and the pathways of the collapse of a single, semiflexible polymer in a poor solvent via 3-D Brownian Dynamics simulations. Earlier work indicates that the condensation of semiflexible polymers generically…

软凝聚态物质 · 物理学 2009-11-10 Alberto Montesi , Matteo Pasquali , F. C. MacKintosh

The collapse and swelling behavior of a generic homopolymer is studied using implicit-solvent, explicit-cosolvent Langevin dynamics computer simulations for varying interaction strengths. The systematic investigation reveals that polymer…

软凝聚态物质 · 物理学 2012-11-06 Anja Muzdalo , Jan Heyda , Joachim Dzubiella

It has been revealed by mean-field theories and computer simulations that the nature of the collapse transition of a polymer is influenced by its bending stiffness $\epsilon_{\rm b}$. In two dimensions, a recent analytical work demonstrated…

软凝聚态物质 · 物理学 2009-11-13 Jie Zhou , Zhong-Can Ou-Yang , Haijun Zhou

Chain-like macromolecules in solution, whether biological or synthetic, transform from an extended conformation to a compact one when temperature or other system parameters change. This collapse transition is relevant in various phenomena,…

软凝聚态物质 · 物理学 2026-05-18 Yanyan Zhu , Haim Diamant , David Andelman

We report the results of Monte Carlo simulations investigating the effect of a spherical confinement within a simple model for a flexible homopolymer. We use the parallel tempering method combined with multi-histogram reweighting analysis…

软凝聚态物质 · 物理学 2012-12-27 M. Marenz , J. Zierenberg , H. Arkin , W. Janke

Molecular dynamics simulations are used to investigate the conformations of a single polymer chain, represented by the Kremer-Grest bead-spring model, in a solution with a Lennard-Jones liquid as the solvent when the interaction strength…

软凝聚态物质 · 物理学 2021-11-17 Yisheng Huang , Shengfeng Cheng

Wetting and drying phenomena are studied for flexible and semiflexible polymer solutions via coarse-grained molecular dynamics simulations and density functional theory calculations. The study is based on the use of Young's equation for the…

软凝聚态物质 · 物理学 2022-02-16 Jiarul Midya , Sergei A. Egorov , Kurt Binder , Arash Nikoubashman

We study the model of a partially directed flexible or semi-flexible homopolymer on a square lattice, subject to an externally applied force, in a direction either parallel to, or perpendicular to the preferred direction. The polymer is…

统计力学 · 物理学 2015-05-19 Pui-Man Lam , Yi Zhen

Dimerization and subsequent aggregation of polymers and biopolymers often occur under nonequilibrium conditions. When the initial state of the polymer is not collapsed or the final folded native state, the dynamics of dimerization can…

软凝聚态物质 · 物理学 2024-11-19 Sangita Mondal , Ved Mahajan , Biman Bagchi

The temperature dependence of the hydrodynamic boundary condition between a PDMS melt and two different non-attractive surfaces made of either an OTS (octadecyltrichlorosilane) self-assembled monolayer (SAM) or a grafted layer of short PDMS…

Dielectric spectroscopy measurements over a broad range of temperature and pressure were carried out on poly(oxybutylene) (POB), a type-A polymer (dielectrically-active normal mode). There are three dynamic processes appearing at lower…

软凝聚态物质 · 物理学 2009-11-10 R. Casalini , C. M. Roland
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