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The movement of a particle described by Brownian motion is quantified by a single parameter, $D$, the diffusion constant. The estimation of $D$ from a discrete sequence of noisy observations is a fundamental problem in biological single…

亚细胞过程 · 定量生物学 2016-04-13 Peter K. Relich , Mark J. Olah , Patrick J. Cutler , Keith A. Lidke

The physics of diffusion phenomena in nano and micro channels has attracted a lot of attention in recent years, due to its close connection with many technological, medical and industrial applications. In the present paper we employ a…

软凝聚态物质 · 物理学 2015-09-30 Umberto Marini Bettolo Marconi , Paolo Malgaretti , Ignacio Pagonabarraga

A stationary Boolean model is the union set of random compact particles which are attached to the points of a stationary Poisson point process. For a stationary Boolean model with convex grains we consider a recently developed collection of…

概率论 · 数学 2013-08-14 Julia Hörrmann , Daniel Hug , Michael Klatt , Klaus Mecke

We implement molecular dynamics simulations in canonical ensemble to study the effect of confinement on a $2d$ crystal of point particles interacting with an inverse power law potential proportional to $r^{-12}$ in a narrow channel. This…

软凝聚态物质 · 物理学 2014-09-30 M. Ebrahim Foulaadvand , Neda Ojaghlou

Diffusive molecular dynamics is a novel model for materials with atomistic resolution that can reach diffusive time scales. The main ideas of diffusive molecular dynamics are to first minimize an approximate variational Gaussian free energy…

数值分析 · 数学 2015-06-09 Gideon Simpson , Mitchell Luskin , David J. Srolovitz

Single Particle Tracking (SPT) can aid in understanding complex spatio-temporal processes. However, quantifying diffusivity and forces from individual live cell trajectories is complicated by inter- & intra-trajectory kinetic heterogeneity,…

定量方法 · 定量生物学 2016-05-19 Christopher P. Calderon

Mathematical models based on probability density functions (PDF) have been extensively used in hydrology and subsurface flow problems, to describe the uncertainty in porous media properties (e.g., permeability modelled as random field).…

流体动力学 · 物理学 2020-06-01 Matteo Icardi , Marco Dentz

Molecular dynamics simulations are a powerful tool to study diffusion processes in battery electrolyte and electrode materials. From a single molecular dynamics simulation many properties relevant to diffusion can be obtained, including the…

化学物理 · 物理学 2018-07-09 Niek J. J. de Klerk , Eveline van der Maas , Marnix Wagemaker

Anisotropic diffusion processes emerge in various fields such as transport in biological tissue and diffusion in liquid crystals. In such systems, the motion is described by a diffusion tensor. For a proper characterization of processes…

数据分析、统计与概率 · 物理学 2013-11-14 Mario Heidernätsch , Michael Bauer , Günter Radons

We study time-dependent density segregation of granular mixtures flowing over an inclined plane. Discrete Element Method (DEM) simulations in a periodic box are performed for granular mixtures of same size and different density particles…

软凝聚态物质 · 物理学 2025-04-16 Soniya Kumawat , Vishnu Kumar Sahu , Anurag Tripathi

Aims. Numerical test-particle simulations are a reliable and frequently used tool to test analytical transport theories and to predict mean-free paths. The comparison between solutions of the diffusion equation and the particle flux is used…

高能天体物理现象 · 物理学 2016-02-17 R. C. Tautz , J. Bolte , A. Shalchi

Single-particle traces of the diffusive motion of molecules, cells, or animals are by-now routinely measured, similar to stochastic records of stock prices or weather data. Deciphering the stochastic mechanism behind the recorded dynamics…

统计力学 · 物理学 2023-09-14 Henrik Seckler , Janusz Szwabinski , Ralf Metzler

Studies on random packing of bidispersive particles have shown that such systems can capture the underlying behavior of more complex phenomena found in physics and materials engineering. In industry, bidispersive particles are used to allow…

统计力学 · 物理学 2020-10-22 Carlos Handrey Araujo Ferraz

The diffusive transport of biased Brownian particles in a two-dimensional symmetric channel is investigated numerically considering both the no-flow and the reflection boundary conditions at the channel boundaries. Here, the geometrical…

软凝聚态物质 · 物理学 2019-09-10 Narender Khatri , P. S. Burada

We propose an approach that links density functional theory (DFT) and molecular dynamics (MD) simulation to study fluid behavior in nanopores in contact with bulk (macropores). It consists of two principal steps. First, the theoretical…

计算物理 · 物理学 2021-07-06 Mariia Vaganova , Irina Nesterova , Yuriy Kanygin , Andrey Kazennov , Aleksey Khlyupin

A molecule traveling in a realistic propagation environment can experience stochastic interactions with other molecules and the environment boundary. The statistical behavior of some isolated phenomena, such as dilute unbounded molecular…

化学物理 · 物理学 2015-05-20 Adam Noel , Karen C. Cheung , Robert Schober

The diffusion transport coefficients of a binary granular suspension where one of the components is present in tracer concentration are determined from the (inelastic) Enskog kinetic equation. The effect of the interstitial gas on the solid…

软凝聚态物质 · 物理学 2023-08-30 Rubén Gómez González , Vicente Garzó

We study the influence of diffusion on NMR experiments when the molecules undergo random motion under the influence of a force field, and place special emphasis on parabolic (Hookean) potentials. To this end, the problem is studied using…

医学物理 · 物理学 2016-05-11 Cem Yolcu , Muhammet Memiç , Kadir Şimşek , Carl-Fredrik Westin , Evren Özarslan

One of the essential questions in the area of granular matter is, how to obtain macroscopic tensorial quantities like stress and strain from ``microscopic'' quantities like the contact forces in a granular assembly. Different averaging…

统计力学 · 物理学 2007-05-23 Marc Lätzel , Stefan Luding , Hans J. Herrmann

A systematic and mechanistic connection between granular materials' macroscopic and grain level behaviors is developed for monodisperse systems of spherical elastic particles under die compaction. The Granular Micromechanics Approach (GMA)…

软凝聚态物质 · 物理学 2018-02-15 Payam Poorsolhjouy , Marcial Gonzalez