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We present a theoretical framework for the linear and nonlinear visco-elastic properties of reversibly crosslinked networks of semiflexible polymers. In contrast to affine models where network strain couples to the polymer end-to-end…

软凝聚态物质 · 物理学 2016-07-06 Jan Plagge , Andreas Fischer , Claus Heussinger

We present a simple and generic theoretical description of actin-based motility, where polymerization of filaments maintains propulsion. The dynamics is driven by polymerization kinetics at the filaments' free ends, crosslinking of the…

细胞行为 · 定量生物学 2015-05-13 Azam Gholami , Martin Falcke , Erwin Frey

Experiments have shown that elasticity of disordered filamentous networks with compliant crosslinks is very different from networks with rigid crosslinks. Here, we model and analyze filamentous networks as a collection of randomly oriented…

生物物理 · 物理学 2015-06-17 A. Sharma , M. Sheinman , K. M. Heidemann , F. C. MacKintosh

We consider a biopolymer bundle consisting of filaments that are crosslinked together. The crosslinks are reversible: they can dynamically bind and unbind adjacent filament pairs as controlled by a binding enthalpy. The bundle is subjected…

软凝聚态物质 · 物理学 2012-01-19 Richard L. C. Vink , Claus Heussinger

In equilibrium, the physical properties of matter are set by the interactions between the constituents. In contrast, the energy input of the individual components controls the behavior of synthetic or living active matter. Great progress…

软凝聚态物质 · 物理学 2025-08-29 Q. Martinet , Y. Li , A. Aubret , E. Hannezo , J. Palacci

In many industrial processes, pieces of the same polymer material are brought into contact at a temperature above the glass transition. Interdiffusion then takes place across the interface and leads to a strengthening of the junction.…

软凝聚态物质 · 物理学 2009-10-31 A. Aradian , E. Raphael , P. -G. de Gennes

Biological cells embedded in fibrous matrices have been observed to form inter-cellular bands of dense and aligned fibers, through which they mechanically interact over long distances. Such matrix-mediated cellular interactions have been…

We present a generic coarse-grained model to describe molecular motors acting on polymer substrates, mimicking, for example, RNA polymerase on DNA or kinesin on microtubules. The polymer is modeled as a connected chain of beads; motors are…

软凝聚态物质 · 物理学 2020-10-14 M. Foglino , E. Locatelli , C. A. Brackley , D. Michieletto , C. Likos , D. Marenduzzo

We propose a class of microstructurally informed models for the linear elastic mechanical behavior of cross-linked polymer networks such as the actin cytoskeleton. Salient features of the models include the possibility to represent…

其他定量生物学 · 定量生物学 2008-02-27 Ronald Y. Kwon , Adrian J. Lew , Christopher R. Jacobs

Elastic effects in a model of disordered nematic elastomers are numerically investigated in two dimensions. Networks crosslinked in the isotropic phase exhibit unusual soft mechanical response against stretching. It arises from gradual…

软凝聚态物质 · 物理学 2009-10-31 Nariya Uchida

Cooperative action of molecular motors is essential for many cellular processes. One possible regulator of motor coordination is the elasticity-mediated crosstalk (EMC) coupling between myosin II motors whose origin is the tensile stress…

生物物理 · 物理学 2015-06-15 Nadiv Dharan , Oded Farago

Microscopic biological systems operate far from equilibrium, are subject to strong fluctuations, and are composed of many coupled components with interactions varying in nature and strength. Researchers are actively investigating the…

统计力学 · 物理学 2023-12-25 Emma Lathouwers , David A. Sivak

Active nematics are the nonequilibrium analog of passive liquid crystals in which anisotropic units consume free energy to drive emergent behavior. Similar to liquid crystal (LC) molecules in displays, ordering and dynamics in active…

Pattern formation and the mechanics of a mixture of actin filaments and myosin motors that is confined by a rigid membrane is investigated. By using a coarse-grained molecular dynamics model, we demonstrate that the competition between the…

软凝聚态物质 · 物理学 2023-04-12 Mitsusuke Tarama , Tatsuo Shibata

We give an overview exploring the role of kinetics in multicomponent mixtures. Compared to the most commonly studied binary (single species plus solvent) case, multicomponent fluids show a rich interplay between kinetics and thermodynamics…

软凝聚态物质 · 物理学 2024-10-01 Filipe C. Thewes , Matthias Krüger , Peter Sollich

We review the physical properties of macromolecular networks, consisting of semiflexible polymers such as actin. We start by giving a theoretical analysis of the conformational statistics and mechanical response of single filaments.…

软凝聚态物质 · 物理学 2008-02-03 Erwin Frey , Klaus Kroy , Jan Wilhelm , Erich Sackmann

Recent studies have shown that packings of cells, both eukaryotic cellular tissues and growing or swarming bacterial colonies, can often be understood as active nematic fluids. A key property of volume-conserving active nematic model…

软凝聚态物质 · 物理学 2022-05-12 Fabian Jan Schwarzendahl , Daniel A. Beller

We derive the constitutive equations of an active polar gel from a model for the dynamics of elastic molecules that link polar elements. Molecular binding kinetics induces the fluidization of the material, giving rise to Maxwell…

生物物理 · 物理学 2017-03-01 David Oriola , Ricard Alert , Jaume Casademunt

We consider a model of an extensible semiflexible filament moving in two dimensions on a motility assay of motor proteins represented explicitly as active harmonic linkers. Their heads bind stochastically to polymer segments within a…

生物物理 · 物理学 2021-08-31 Amir Shee , Nisha Gupta , Abhishek Chaudhuri , Debasish Chaudhuri

Active semiflexible filaments are crucial in various biophysical processes, yet insights into their single-filament behavior have predominantly relied on theory and simulations, owing to the scarcity of controllable synthetic systems. Here,…

软凝聚态物质 · 物理学 2025-07-14 Bipul Biswas , Prasanna More , Hima Nagamanasa Kandula