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Proteinoids, as soft matter fluidic systems, are computational substrates that have been recently proposed for their analog computing capabilities. Such systems exhibit oscillatory electrical activity because of cationic and anionic…

Proteinoids are thermal proteins which form microspheres in water in presence of salt. Ensembles of proteinoid microspheres exhibit passive non-linear electrical properties and active neuron-like spiking of electrical potential. We propose…

新兴技术 · 计算机科学 2023-06-27 Panagiotis Mougkogiannis , Andrew Adamatzky

Proteinoids, or thermal proteins, are inorganic entities formed by heating amino acids to their melting point and commencing polymerisation to form polymeric chains. Typically, their diameters range from 10 to 100 micron. Some amino acids…

新兴技术 · 计算机科学 2023-02-13 Panagiotis Mougkogiannis , Neil Phillips , Andrew Adamatzky

Proteinoids -- thermal proteins -- are produced by heating amino acids to their melting point and initiation of polymerisation to produce polymeric chains. Proteinoids swell in aqueous solution into hollow microspheres. The proteinoid…

新兴技术 · 计算机科学 2021-06-03 Andrew Adamatzky

Protocells are a type of synthetic cells, which, if engineered to have properties similar to a natural cell, can have immense applications in synthetic biology and bioengineering communities. Proteinoids are one of the leading contenders…

流体动力学 · 物理学 2022-12-13 Saksham Sharma , Panagiotis Mougoyannis , Giuseppe Tarabella , Andrew Adamatzky

Proteinoids (thermal proteins) are produced by heating amino acids to their melting point and initiation of polymerisation to produce polymeric chains. Amino acid-like molecules, or proteinoids, can condense at high temperatures to create…

材料科学 · 物理学 2023-02-14 Panagiotis Mougkogiannis , Andrew Adamatzky

Proteinoids, also known as thermal proteins, possess a fascinating ability to generate microspheres that exhibit electrical spikes resembling the action potentials of neurons. These spiking microspheres, referred to as protoneurons, hold…

新兴技术 · 计算机科学 2023-06-13 Panagiotis Mougkogiannis , Andrew Adamatzky

With an aim to build analog computers out of soft matter fluidic systems in future, this work attempts to invent a new information-theoretic language, in the form of two-dimensional Quick Response (QR) codes. This language is, effectively,…

新兴技术 · 计算机科学 2024-05-31 Saksham Sharma , Adnan Mahmud , Giuseppe Tarabella , Panagiotis Mougoyannis , Andrew Adamatzky

Synthetic polymers are versatile and widely used materials. Similar to small organic molecules, a large chemical space of such materials is hypothetically accessible. Computational property prediction and virtual screening can accelerate…

机器学习 · 计算机科学 2022-10-13 Matteo Aldeghi , Connor W. Coley

Protein-stabilised emulsion gels can be studied in the theoretical framework of colloidal gels, because both protein assemblies and droplets may be considered as soft colloids. These particles differ in their nature, size and softness, and…

软凝聚态物质 · 物理学 2020-07-10 Marion Roullet , Paul S. Clegg , William J. Frith

A class of analog computers built from large numbers of microscopic probabilistic machines is discussed. It is postulated that such computers are implemented in biological systems as ensembles of protein molecules. The formalism is based on…

生物物理 · 物理学 2008-06-24 Victor Eliashberg

Proteins are dynamic, adopting ensembles of conformations. The nature of this conformational heterogenity is imprinted in the raw electron density measurements obtained from X-ray crystallography experiments. Fitting an ensemble of protein…

定量方法 · 定量生物学 2024-12-19 Sai Advaith Maddipatla , Nadav Bojan Sellam , Sanketh Vedula , Ailie Marx , Alex Bronstein

Folding and aggregation of proteins, the interaction between proteins and membranes, as well as the adsorption of organic soft matter to inorganic solid substrates belong to the most interesting challenges in understanding structure and…

软凝聚态物质 · 物理学 2007-12-06 Michael Bachmann , Wolfhard Janke

Proteomics can be defined as the large-scale analysis of proteins. Due to the complexity of biological systems, it is required to concatenate various separation techniques prior to mass spectrometry. These techniques, dealing with proteins…

Proteins are polymers of amino acids. These macromolecules are synthesized by intracellular machines called ribosomes. Although the experimental investigation of protein synthesis has been a traditional area of research in molecular cell…

生物物理 · 物理学 2009-11-13 Aakash Basu , Debashish Chowdhury

Micrometre sized colloidal particles can be viewed as large atoms with tailorable size, shape and interactions. These building blocks can assemble into extremely rich structures and phases, in which the thermal motions of particles can be…

软凝聚态物质 · 物理学 2017-11-10 Bo Li , Di Zhou , Yilong Han

In this study, we present a method of pattern mining based on network theory that enables the identification of protein structures or complexes from synthetic volume densities, without the knowledge of predefined templates or human biases…

定量方法 · 定量生物学 2022-10-18 August George , Doo Nam Kim , Trevor Moser , Ian T. Gildea , James E. Evans , Margaret S. Cheung

Microgels are colloidal-scale particles individually made of crosslinked polymer networks that can swell and deswell in response to external stimuli, such as changes to temperature or pH. Despite a large amount of experimental activities on…

软凝聚态物质 · 物理学 2019-02-08 Nicoletta Gnan , Lorenzo Rovigatti , Maxime Bergman , Emanuela Zaccarelli

We analyze large systems of interacting proteins, using techniques from the non-equilibrium statistical mechanics of disordered many-particle systems. Apart from protein production and removal, the most relevant microscopic processes in the…

分子网络 · 定量生物学 2015-05-14 A. C. C. Coolen , S. Rabello

A coarse-grained computational procedure based on the Finite Element Method is proposed to calculate the normal modes and mechanical response of proteins and their supramolecular assemblies. Motivated by the elastic network model, proteins…

生物大分子 · 定量生物学 2007-05-23 Mark Bathe
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