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A ubiquitous feature of living cells is their growth over time followed by division into daughter cells. How isogenic cell populations maintain size homeostasis, i.e., a narrow distribution of cell size, is an intriguing fundamental…

细胞行为 · 定量生物学 2016-06-03 César Augusto Vargas-García , Mohammad Soltani , Abhyudai Singh

This paper presents an interesting experimental example of voter-model statistics in biology. In recent work on mouse tail-skin, where proliferating cells are confined to a two-dimensional layer, we showed that cells proliferate and…

生物物理 · 物理学 2009-11-13 Allon M. Klein , David P. Doupe , Philip H. Jones , Benjamin D. Simons

Adaptive control in biological systems, such as intestinal immunity, remains poorly understood despite detailed knowledge of underlying regulatory networks. We propose an alternative framework based on stochastic martingale turnover, in…

适应与自组织系统 · 物理学 2026-05-01 Tomoyuki Yamaguchi

Cell phenotype dynamic homeostasis contrasts with the inherent randomness of intracellular reactions. Although feedback control of master regulatory genes (MRG) is a key strategy for maintaining gene network expression ranges limited,…

Maintaining tissue homeostasis requires appropriate regulation of stem cell differentiation. The Waddington landscape posits that gene circuits in a cell form a potential landscape of different cell types, wherein cells follow attractors of…

定量方法 · 定量生物学 2023-09-15 Rongsheng Huang , Qiaojun Situ , Jinzhi Lei

Biological cells exhibit a hierarchical spatial organization, where various compartments harbor condensates that form by phase separation. Cells can control the emergence of these condensates by affecting compartment size, the amount of the…

生物物理 · 物理学 2025-04-03 Riccardo Rossetto , Gerrit Wellecke , David Zwicker

Cell division, aging, and stress recovery triggers spatial reorganization of cellular components in the cytoplasm, including membrane bound organelles, with molecular changes in their compositions and structures. However, it is not clear…

细胞行为 · 定量生物学 2021-09-06 Sarah Lecinski , Jack W Shepherd , Lewis Frame , Imogen Hayton , Chris MacDonald , Mark C Leake

The work is devoted to the analysis of cell population dynamics where cells make a choice between differentiation and apoptosis. This choice is based on the values of intracellular proteins whose concentrations are described by a system of…

细胞行为 · 定量生物学 2016-03-30 Malay Banerjee , Vitaly Volpert

There is considerable theoretical and experimental support to the proposal that tissue homeostasis in the adult skin can be represented as a critical branching process. The homeostatic condition requires that the proliferation rate of the…

统计力学 · 物理学 2020-01-24 Somsubhra Ghosh , Indrani Bose

Growth in confined spaces can drive cellular populations through a jamming transition from a fluid-like state to a solid-like state. Experiments have found that jammed budding yeast populations can build up extreme compressive pressures…

软凝聚态物质 · 物理学 2019-05-29 Pawel Gniewek , Carl F Schreck , Oskar Hallatschek

Multicellular tissues are the building blocks of many biological systems and organs. These tissues are not static, but dynamically change over time. Even if the overall structure remains the same there is a turnover of cells within the…

组织与器官 · 定量生物学 2021-02-12 Domenic P. J. Germano , James M. Osborne

Investigations of natural variation among cells within a population are essential for understanding the stochastic nature of tissue cell deformation under applied load. In the existing literature, the population variation of single-cell…

细胞行为 · 定量生物学 2011-07-14 John M. Maloney , Krystyn J. Van Vliet

Characterization of pluripotent states, in which cells can both self-renew and differentiate, and the irreversible loss of pluripotency are important research areas in developmental biology. In particular, an understanding of these…

分子网络 · 定量生物学 2015-09-02 Tadashi Miyamoto , Chikara Furusawa , Kunihiko Kaneko

Quorum sensing is the regulation of gene expression in response to changes in cell density. To measure their cell density, bacterial populations produce and detect diffusible molecules called autoinducers. Individual bacteria internally…

分子网络 · 定量生物学 2017-04-12 Thibaud Taillefumier , Ned S. Wingreen

The self renewal process in colonic crypts is the object of several studies. We present here a new compartment model with the following characteristics: a) We distinguish different classes of cells: stem cells, 6 generations of transit…

组织与器官 · 定量生物学 2018-04-04 Alejandro J. Fendrik , Lilia Romanelli , Ernesto Rotondo

We study molecular dynamics within populations of diffusively coupled cells under the assumption of fast diffusive exchange. As a technical tool, we propose conditions on boundedness and ultimate boundedness for systems with a singular…

细胞行为 · 定量生物学 2012-12-19 Steffen Waldherr , Frank Allgöwer

Cells coexist together in colonies or as tissues. Their behaviour is controlled by an interplay between intercellular forces and biochemical regulation. We develop a simple model of the cell cycle, the fundamental regulatory network…

生物物理 · 物理学 2021-08-04 Jintao Li , Simon K. Schnyder , Matthew S. Turner , Ryoichi Yamamoto

Many cellular components are present in such low numbers that individual stochastic production and degradation events lead to significant fluctuations in molecular abundances. Although feedback control can, in principle, suppress such…

分子网络 · 定量生物学 2025-12-25 Ryan Ripsman , Brayden Kell , Andreas Hilfinger

The goal of polyhomeostatic control is to achieve a certain target distribution of behaviors, in contrast to polyhomeostatic regulation which aims at stabilizing a steady-state dynamical state. We consider polyhomeostasis for individual and…

无序系统与神经网络 · 物理学 2013-05-29 Dimitrije Markovic , Claudius Gros

Microbial growth and division are fundamental processes relevant to many areas of life science. Of particular interest are homeostasis mechanisms, which buffer growth and division from accumulating fluctuations over multiple cycles. These…

细胞行为 · 定量生物学 2022-10-12 Lee Susman , Maryam Kohram , Harsh Vashistha , Jeffrey T. Nechleba , Hanna Salman , Naama Brenner