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We develop a comprehensive mathematical model of platelet, megakaryocyte, and thrombopoietin dynamics in humans. We show that there is a single stationary solution that can undergo a Hopf bifurcation, and use this information to investigate…

A connection is established between discrete stochastic model describing microscopic motion of fluctuating cells, and macroscopic equations describing dynamics of cellular density. Cells move towards chemical gradient (process called…

生物物理 · 物理学 2010-05-18 Pavel M. Lushnikov , Nan Chen , Mark Alber

We develop a theoretical framework for understanding dynamic morphologies and stability of droplet interface bilayers (DIBs), accounting for lipid kinetics in the monolayers and bilayer, and droplet evaporation due to imbalance between…

软凝聚态物质 · 物理学 2018-06-13 Benjamin Guiselin , Jack O. Law , Buddhapriya Chakrabarti , Halim Kusumaatmaja

In this work, we study the problem pertaining to personalized classification of subclinical atherosclerosis by developing a hierarchical graph neural network framework to leverage two characteristic modalities of a patient: clinical…

机器学习 · 计算机科学 2025-09-15 Irsyad Adam , Steven Swee , Erika Yilin , Ethan Ji , William Speier , Dean Wang , Alex Bui , Wei Wang , Karol Watson , Peipei Ping

Acidosis in tumors arises from reprogrammed metabolism and compromised vasculature, creating a harsh, acidic microenvironment that drives the evolutionary selection of acid-resistant cell phenotypes. A mathematical model is proposed to…

组织与器官 · 定量生物学 2025-12-30 Prithvi Anickode , Fabio Milner

Randomly crosslinked macromolecules undergo a liquid-to-amorphous solid phase transition at a critical crosslink concentration. This transition has two main signatures: the random localization of a fraction of the monomers and the emergence…

无序系统与神经网络 · 物理学 2009-10-31 Horacio E. Castillo , Paul M. Goldbart

A coupled system of nonlinear mixed-type equations modeling early stages of angiogenesis is analyzed in a bounded domain. The system consists of stochastic differential equations describing the movement of the positions of the tip and stalk…

偏微分方程分析 · 数学 2022-06-24 Markus Fellner , Ansgar Jüngel

The size and composition distribution of an ensemble of aqueous organic droplets, evolving via nucleation and concomitant chemical aging, may be affected by the latent heat of condensation and enthalpy of heterogeneous chemical reactions,…

大气与海洋物理 · 物理学 2022-01-11 Yuri S. Djikaev , Batradz I. Djikkaity

Dynamic instability of microtubules is considered using frameworks of non-linear thermodynamics and non-equilibrium reaction-diffusion systems. Stochastic assembly/disassembly phases in the polymerization dynamics of microtubules are…

亚细胞过程 · 定量生物学 2016-11-15 Eugene Katrukha

Cell-cell adhesion plays a vital role in the development and maintenance of multicellular organisms. One of its functions is regulation of cell migration, such as occurs, e.g. during embryogenesis or in cancer. In this work, we develop a…

组织与器官 · 定量生物学 2024-03-08 Anna Zhigun , Mabel Lizzy Rajendran

We present a dynamical model of lipoprotein metabolism derived by combining a cascading process in the blood stream and cellular level regulatory dynamics. We analyse the existence and stability of equilibria and show that this…

定量方法 · 定量生物学 2007-05-23 Elias August , Kim H. Parker , Mauricio Barahona

The mechanical integrity of arteries is of prime importance, for a proper oxygen and nutrients delivery to all organs. To optimize their mechanical properties, healthy arteries exhibit a complex hierarchical microstructure which ensures a…

医学物理 · 物理学 2019-12-13 Claire Morin , Witold Krasny , Stéphane Avril

Particle resuspension refers to the physical process by which solid particles deposited on a surface are, first, detached and, then, entrained away by the action of a fluid flow. In this study, we explore the dynamics of large and heavy…

流体动力学 · 物理学 2024-12-31 Hao Liu , Mireille Bossy , Bernhard Vowinckel , Christophe Henry

Local diffusion coefficients in disordered systems such as spin glass systems and living cells are highly heterogeneous and may change over time. Such a time-dependent and spatially heterogeneous environment results in irreproducibility of…

统计力学 · 物理学 2016-12-21 Takuma Akimoto , Eiji Yamamoto

In this paper, we derive an effective macroscale description suitable to describe the growth of biological tissue within a porous tissue-engineering scaffold. As in our recent work (Holden \textit{et al.} "A multiphase multiscale model for…

组织与器官 · 定量生物学 2019-10-01 E. C. Holden , B. S. Brook , S. J. Chapman , R. D. O'Dea

Understanding the mechanism of nucleation of the stable phase inside the metastable parent phase during a first order phase transition has been a subject of outstanding interest in natural science. The problem becomes even more challenging…

软凝聚态物质 · 物理学 2007-05-23 Prabhakar Bhimalapuram , Suman Chakrabarty , Biman Bagchi

The planar front of a growing a crystal is often destroyed by instabilities. In the case of growth from a condensed phase, the most frequent ones are diffusion instabilities, which will be but briefly discussed in simple terms in chapter…

材料科学 · 物理学 2007-05-23 Paolo Politi , Genevieve Grenet , Alain Marty , Anne Ponchet , Jacques Villain

Tissue homeostasis, the biological process of maintaining a steady state in tissue via control of cell proliferation, death, and metabolic function, is essential for the development, growth, maintenance, and proper function of living…

生物物理 · 物理学 2025-01-15 KVS Chaithanya , Jan Rozman , Andrej Košmrlj , Rastko Sknepnek

Accumulation of particles while flowing past constrictions is a ubiquitous phenomenon observed in diverse systems. Some of the common examples are jamming of salt crystals near the orifice of salt shakers, clogging of filter systems,…

软凝聚态物质 · 物理学 2020-05-28 P. Prakash , A. Z. Abdulla , M. Varma

Non-aligning self-propelled particles with purely repulsive excluded volume interactions undergo athermal motility-induced phase separation into a dilute gas and a dense cluster phase. Here, we use enhanced sampling computational methods…

软凝聚态物质 · 物理学 2016-10-05 Gabriel S. Redner , Caleb G. Wagner , Aparna Baskaran , Michael F. Hagan